View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1863_low_58 (Length: 317)
Name: NF1863_low_58
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_low_58 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 17 - 303
Target Start/End: Complemental strand, 45169065 - 45168775
Alignment:
| Q |
17 |
aattagcaacaaaagtagtgataaataaaattgaatttctctataattcggtggttactaaaacataatgctttaccaatagggagctacactttgatgc |
116 |
Q |
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| T |
45169065 |
aattagcaacaaaagtagtgataaataaaattgaatttctctataattcggtggttactaaaacataatgctttaccaatagggagctacgctttgatgc |
45168966 |
T |
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| Q |
117 |
aaaaaacaccgatcgggtcgtatcctccaataggttttgtgcgaccaagagttatggcccagtaaatatgagggcccgtagagctatcccataagtttga |
216 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
45168965 |
aaaaaacaccgatcgggtcgtatcctccaatagattttgtgcgaccaagagttatggcccgataaatatgagggcccgtagagctatcccataagtctga |
45168866 |
T |
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| Q |
217 |
ctctctttgaatagagatagtgtgaagcatttgttga----taatcactctttccttttgttttcctcatgaatcccaccattttcctatg |
303 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45168865 |
ctctctttgaatagagatagtgtgaagcatttgttgataattaatcactctttccttttgttttcctcatgaatcccaccattttcctatg |
45168775 |
T |
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