View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1863_low_6 (Length: 614)
Name: NF1863_low_6
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 535; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 17 - 589
Target Start/End: Complemental strand, 39245959 - 39245383
Alignment:
| Q |
17 |
tccagaatatacttctaagactacattaatgtgttctatatataacatgcaatcgttaatttcaaacggtttattggaacgatgaaaaatgaagtcattc |
116 |
Q |
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| T |
39245959 |
tccagaatatacttctaagactatattaatgtgttctatatataacatgcaatcgttaatttcaaacggtttattggaacgatgaaaaatgaagtcattc |
39245860 |
T |
|
| Q |
117 |
aaatagccttattggtgataattaatcaaatgaaacaga---tagttaaagcagcaaaagccataattaacgtgaaaaattgaaaaggtggaaaaaggtc |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39245859 |
aaatagccttattggtgataattaatcaaatgaaacagaaagtagttaaagcagcaaaagccataattaacgtgaaaaattgaaaaggtggaaaaaggtc |
39245760 |
T |
|
| Q |
214 |
aaagtgtggctagctaatttttaatttttacattgaaaaggtgctccccatctagcagatcagtcactgtttccttactatacgtggttttcatttcctg |
313 |
Q |
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||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
39245759 |
aaagtgtagctagctaatttttaattttcacattgaaaaggtgctccccatctagcagaacagtcactgtttccttactatacgtggttttcatttcctg |
39245660 |
T |
|
| Q |
314 |
gctatgagttccaaagatgttaagtttcaatgatgaagctaaaacacttgtctatgttttatcaagaaaaacaaaacacttgtctatgtctcaat-aatt |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
39245659 |
gctatgagttccaaagatgttaagtttcaatgatgaagctaaaacacttgtctatgttttataaagaaaaacaaaacacttgtctatgtctcaataaatt |
39245560 |
T |
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| Q |
413 |
tatagtgctggctaaaactaaggtgtgtgatgacccactaacaactgcatgagcatgagctcatcaactttatcctttaagtgaagaagcgtaatgatgg |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39245559 |
tatagtgctggctaaaactaaggtgtgtgatgacccactaacaactgcatgagcatgagctcatcaactttatcctttaagtgaagaagcgtaatgatgg |
39245460 |
T |
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| Q |
513 |
ttaatgaaacacgtacaaagccacaactttatcctttagaagagatattcagtaagctagaaaaccaatgttgtcta |
589 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39245459 |
ttaatgaaacacgtacaaagccacaactttatcctttagaagagatattcagtaagctagaaaaccaatgttgtcta |
39245383 |
T |
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