View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1863_low_66 (Length: 291)
Name: NF1863_low_66
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_low_66 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 13 - 274
Target Start/End: Original strand, 32064444 - 32064705
Alignment:
| Q |
13 |
aatattaacagggcgtcctgcagcttgagcgcatagtttagctattccatttagagtcaccgcacggtcactcacacagttgaaaatgctatgatttgca |
112 |
Q |
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| T |
32064444 |
aatattaacagggcgtcctgcagcttgagcgcatagtttagctattccatttagagtcaccgcacggtcactcacacagttgaaaatgctatgatttgca |
32064543 |
T |
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| Q |
113 |
gcatccgggttctcaacagctagagtcaacattgaagacaagtctttaacatgagatatgttagtgagttgcaatcctgaaccaggaattagcacaggtc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32064544 |
gcatccgggttctcaacagctagagtcaacattgaagacaagtctttaacatgagatatgttagtgagttgcaatcctgaaccaggaattagcacaggtc |
32064643 |
T |
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| Q |
213 |
tgtcccgaacaatccctacaaatggcaatatacatttcttttagaagttctaaattagcata |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32064644 |
tgtcccgaacaatccctacaaatggcaatatacatttcttttagaagttctaaattagcata |
32064705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 17 - 169
Target Start/End: Original strand, 51280696 - 51280848
Alignment:
| Q |
17 |
ttaacagggcgtcctgcagcttgagcgcatagtttagctattccatttagagtcaccgcacggtcactcacacagttgaaaatgctatgatttgcagcat |
116 |
Q |
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||||||||||| |||||||| | || | |||||||||||||||||||||| |||| ||| |||||||||| ||||||||||||| |||| ||||||||| |
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| T |
51280696 |
ttaacagggcgccctgcagcctaagtacgtagtttagctattccatttagaatcactgcaaggtcactcacgcagttgaaaatgccatgacttgcagcat |
51280795 |
T |
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| Q |
117 |
ccgggttctcaacagctagagtcaacattgaagacaagtctttaacatgagat |
169 |
Q |
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| | ||||||||||||||||||| ||| || || |||||||||||||||||| |
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| T |
51280796 |
ctgaattctcaacagctagagtcagcatcgacgataagtctttaacatgagat |
51280848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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