View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1863_low_68 (Length: 290)
Name: NF1863_low_68
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_low_68 |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 9 - 276
Target Start/End: Complemental strand, 143782 - 143519
Alignment:
| Q |
9 |
atgcagtactttcactaagaaatatattcatacaaactgtgaatgttaacattacataacatatatataattcatgaaaaataataagatatgttttgaa |
108 |
Q |
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| T |
143782 |
atgcagtactttcactaagaaatatattcatacaaactgtgaatgttaacattacataacatata----attcatgaaaaataataagatatgtttggaa |
143687 |
T |
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| Q |
109 |
attctaacaaaatcaactagtactaagaactacttcaaacgaaatacaccaataactctaagaaaattgacagcagcaaataagaaaattgcaattccaa |
208 |
Q |
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| T |
143686 |
attctaacaaaatcaactagtactaagaactacttcaaacgaaatacaccaataactctaagaaaattgacagcagcaaataagaaaattgcaattccaa |
143587 |
T |
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| Q |
209 |
caacagttgaactgattctccaaggatcacgaaaatacactgatctcaacattcccatataatgtttc |
276 |
Q |
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| T |
143586 |
caacagttgaactgattctccaaggatcacgaaaatacactgatctcaacattcccatataatgtttc |
143519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 106251 - 106318
Alignment:
| Q |
205 |
ccaacaacagttgaactgattctccaaggatcacgaaaatacactgatctcaacattcccatataatg |
272 |
Q |
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| T |
106251 |
ccaacaatagttgagctgaatctccaaggatcacgaaaataaactgatctcagcattcccatataatg |
106318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 73 - 276
Target Start/End: Original strand, 45957935 - 45958142
Alignment:
| Q |
73 |
atataattcatgaaaaataataagatatgttttgaaattctaacaaaatcaactagtactaa----gaactacttcaaacgaaatacaccaataactcta |
168 |
Q |
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| T |
45957935 |
atataattcatgaaaaataatatgatatgtgtggaaattctaacaaaatcaactagtactaaaaattaattacttcagacgaactgcaccaataactcta |
45958034 |
T |
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| Q |
169 |
agaaaattgacagcagcaaataagaaaattgcaattccaacaacagttgaactgattctccaaggatcacgaaaatacactgatctcaacattcccatat |
268 |
Q |
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|||||||||||| |||||||||||||||| |||||||| |||||||||||||| | |||| |||||||||||| |||||||| || ||||||||||||| |
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| T |
45958035 |
agaaaattgacaacagcaaataagaaaatagcaattcccacaacagttgaactaagcctccgaggatcacgaaagtacactgaccttaacattcccatat |
45958134 |
T |
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| Q |
269 |
aatgtttc |
276 |
Q |
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|||||||| |
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| T |
45958135 |
aatgtttc |
45958142 |
T |
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