View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1863_low_7 (Length: 563)
Name: NF1863_low_7
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_low_7 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 16 - 563
Target Start/End: Complemental strand, 14250077 - 14249530
Alignment:
| Q |
16 |
agttggcaaagcatcaaaccatgacgttaattttgaggaagaatggattcttttttatatcacgtcaaagagtacttttgttctcatttagaaagaaaga |
115 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
14250077 |
agttggcacatcatcaaaccatgacgttaattttgaggaagaatggattcttttttatatcacgtcaaagagtacttttgttctcatctagaaagaaaga |
14249978 |
T |
|
| Q |
116 |
atgaagttaagaaatgaagtgataaaattaaagatgttaagagtttgatcaccacctccataatattgttaataacactaacatttgccgtaaagaaaca |
215 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
14249977 |
atgaagttaagaagtgaagtgataaaattaaagatgttaagagtttgatcaccacctccataatattattaataacactaacatttgccataaagaaaca |
14249878 |
T |
|
| Q |
216 |
aaacaaggtcctaagcaaaaaagaatcattcatcattttctcatggggggtgaagatatcaagacatgtacagctggttataagaaacaaaaatcacatg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14249877 |
aaacaaggtcctaagcaaaaaagaatcattcatcattttctcatggggggtgaagatatcaagacatgtacagctggttataagaaacaaaaatcacatg |
14249778 |
T |
|
| Q |
316 |
tattatatatatagttcttaagtagtattccaatttcctcatgctcatttcttaccaacataacattgattgctacatacgagaatgaaacattggagac |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14249777 |
tattatatatatagttcttaagtagtattccaatttcctcatgctcatttcttaccaacataacattgattgctacatacgagaatgaaacattggagac |
14249678 |
T |
|
| Q |
416 |
tatgttgaagcgtgttgttcattctttaggtctagtggaacacactaatgagaatccaagaagaaagaacaaggtgaagcgtaagcatccgcgacaagag |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14249677 |
tatgttgaagcgtgttgttcattctttaggtctagtggaacacactaatgagaatccaagaagaaagaacaaggtgaagcgtaagcatccgcgacaagag |
14249578 |
T |
|
| Q |
516 |
aaaaccaaagagaatagcaaaaccagtgttccaaatggagtaactgta |
563 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14249577 |
aaaaccaaagagaatagcaaaaccagtgttccaaatggagtaactgta |
14249530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University