View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1863_low_71 (Length: 285)
Name: NF1863_low_71
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_low_71 |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 2 - 270
Target Start/End: Complemental strand, 41333219 - 41332951
Alignment:
| Q |
2 |
catcagtgaggttggttccaaaaattagactgctataccttccaccctgagtgtccctccctctaccataagacggcaagggatcaatcaccggccattc |
101 |
Q |
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| T |
41333219 |
catcagtgaggttggttccaaaaattagactgctataccttccaccctgagtgtccctccctctaccataagacggcaagggatcaatcaccggccattc |
41333120 |
T |
|
| Q |
102 |
actttcatcctaacaaaacacaaacatagtattgaaatactttaattacatatggtgaagagttacgttacattttcatattcatattgacaggaaaaag |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41333119 |
actttcatcctaacaaaacacaaacatagtattgaaatactttaattacatatggtgaagagttacgttacattttcatattcatattgacaggaaaaag |
41333020 |
T |
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| Q |
202 |
ttagttaagctattatcaaacctgagaaccaagaatgacagcatctttgtgtaggaataaagtgaaatg |
270 |
Q |
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| T |
41333019 |
ttagttaagctattatcaaacctgagaaccaagaatgacagcatctttgtgtaggaataaagtgaaatg |
41332951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 31382529 - 31382580
Alignment:
| Q |
2 |
catcagtgaggttggttccaaaaattagactgctataccttccaccctgagt |
53 |
Q |
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| T |
31382529 |
catcagtgaggttggttacaaaaattagactgctataacttccaccttgagt |
31382580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 31397813 - 31397864
Alignment:
| Q |
2 |
catcagtgaggttggttccaaaaattagactgctataccttccaccctgagt |
53 |
Q |
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| T |
31397813 |
catcagtcaggttggttccaaaaattagactgctctacctgccaccctgagt |
31397864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 30365294 - 30365345
Alignment:
| Q |
2 |
catcagtgaggttggttccaaaaattagactgctataccttccaccctgagt |
53 |
Q |
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|||||||||||||||||| |||||| | |||||||||||||||||| ||||| |
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| T |
30365294 |
catcagtgaggttggttcaaaaaatgaaactgctataccttccaccttgagt |
30365345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 45083377 - 45083422
Alignment:
| Q |
2 |
catcagtgaggttggttccaaaaattagactgctataccttccacc |
47 |
Q |
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||||| ||||||| ||||||||||| ||||||||| |||||||||| |
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| T |
45083377 |
catcaatgaggttagttccaaaaatgagactgctaaaccttccacc |
45083422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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