View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1863_low_72 (Length: 279)
Name: NF1863_low_72
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_low_72 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 91; Significance: 4e-44; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 89 - 216
Target Start/End: Complemental strand, 44300943 - 44300814
Alignment:
| Q |
89 |
tatttagagtattgagagaaacacatttgctgggtttgggaatttgtcggtggttgtatcgttattaaaccctggctcatgtccatactcgcttta--at |
186 |
Q |
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| T |
44300943 |
tatttggagtattgagagaaacacatttgctgggtttcggaatttgtcggtggttggaccgttattaaaccctggctcatgtccatactcactttaatat |
44300844 |
T |
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| Q |
187 |
gtttgtgatatttggatcatactgcgaggc |
216 |
Q |
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| T |
44300843 |
gtttgtaatatttggatcattctgcgaggc |
44300814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 67 - 136
Target Start/End: Complemental strand, 44311854 - 44311785
Alignment:
| Q |
67 |
tatcaaaattgatgttttaacatatttagagtattgagagaaacacatttgctgggtttgggaatttgtc |
136 |
Q |
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| T |
44311854 |
tatcaaaattgaagttttaacatatttggagtattgagagaaacacatttgctgggtttgggaatttgtc |
44311785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 44301019 - 44300979
Alignment:
| Q |
20 |
atatctgcaatgacttaattaggcattgtctgcatcatgct |
60 |
Q |
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| T |
44301019 |
atatctgcaatgacttaattaggcagtgtccgcatcatgct |
44300979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 207
Target Start/End: Complemental strand, 44311783 - 44311735
Alignment:
| Q |
159 |
cctggctcatgtccatactcgctttaatgtttgtgatatttggatcata |
207 |
Q |
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| T |
44311783 |
cctggctcatgtccatactcactttagtgtgtgtaatatttggatcata |
44311735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 44311968 - 44311922
Alignment:
| Q |
19 |
aatatctgcaatgacttaattaggcattgtctgcatcatgctatgga |
65 |
Q |
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| T |
44311968 |
aatatatgcaatgacttaactaggcaatgtccgcatcatgctatgga |
44311922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 237 - 279
Target Start/End: Complemental strand, 18701599 - 18701557
Alignment:
| Q |
237 |
ttcatacttcaaataatttactagcttagggtatttttggaaa |
279 |
Q |
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| T |
18701599 |
ttcatacttcaaataatttactagcttagggtatttttggaaa |
18701557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 279
Target Start/End: Complemental strand, 18705355 - 18705319
Alignment:
| Q |
243 |
cttcaaataatttactagcttagggtatttttggaaa |
279 |
Q |
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| T |
18705355 |
cttcaaataatatactagcttagggtatttttggaaa |
18705319 |
T |
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