View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1863_low_73 (Length: 278)
Name: NF1863_low_73
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_low_73 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 10 - 278
Target Start/End: Complemental strand, 35172138 - 35171870
Alignment:
| Q |
10 |
gaaaaatatttgaagtgtgctaagtaaaatatataccacataccatgtgacacataacaagaaccttttcagacattacttcaaatatgcgtgagcacac |
109 |
Q |
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| T |
35172138 |
gaaaaatatttgaagtgtgctaagtaaaatatataccacataccatgtgacacataacaagaaccttttcagacattacttcaaatatgcgtgagcacac |
35172039 |
T |
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| Q |
110 |
gtgtgccaaaagttacaacattcatatttttgttgtgataaaccacatatatgttcactacactgttgatttcgttataagtaggtgatcnnnnnnntca |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
35172038 |
gtgtgccaaaagttacaacattcatatttttgttgtgataaaccacatatatgttcactacactattgatttcgttataagtaggtgatcaaaaaaatca |
35171939 |
T |
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| Q |
210 |
tacaagacttgcagctcttaccgaaagcacttcaagtattatcacaggttgtggaaagtaaaaaaggat |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35171938 |
tacaagacttgcagctcttaccgaaagcacttcaagtattatcacaggttgtggaaagtaaaaaaggat |
35171870 |
T |
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