View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1863_low_74 (Length: 278)
Name: NF1863_low_74
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_low_74 |
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| [»] scaffold0283 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 7 - 262
Target Start/End: Original strand, 22263788 - 22264043
Alignment:
| Q |
7 |
cttcctatactctctcaaattcccacttgtacaaacctcagtgatgaaattcagtgtgttatgatccttatccctccaaacattgtaaagtgcaatgatg |
106 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
22263788 |
cttcctatactccctcaaattcccacttgtacaaacctcagtgatgaaattcagtgtgttatgctccttatccctccaaacattgtaaagtgcaatgatg |
22263887 |
T |
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| Q |
107 |
tttttgtttgtcatgtttctaagaagtctcacttcagagtaaagtctttcaatcattgcagggtcattgctgaaatttctgagcttaacttgattccatg |
206 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22263888 |
tttttgtttgtcatgtttttaagaagtctcacttcagagtaaagtctttcaatcattgcagggtcattgctgaaatttctgagcttaacttgattccatg |
22263987 |
T |
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| Q |
207 |
ctacttctattccttcttcattatcaaattctttatagacttttttacaagaacca |
262 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
22263988 |
ctacttctattccttcttcattatcaaatgctttatagacttttttacaagcacca |
22264043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 7 - 262
Target Start/End: Complemental strand, 22270052 - 22269797
Alignment:
| Q |
7 |
cttcctatactctctcaaattcccacttgtacaaacctcagtgatgaaattcagtgtgttatgatccttatccctccaaacattgtaaagtgcaatgatg |
106 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
22270052 |
cttcctatactccctcaaattcccacttgtacaaacctcagtgatgaaattcagtgtgttatgctccttatccctccaaacattgtaaagtgcaatgatg |
22269953 |
T |
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| Q |
107 |
tttttgtttgtcatgtttctaagaagtctcacttcagagtaaagtctttcaatcattgcagggtcattgctgaaatttctgagcttaacttgattccatg |
206 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22269952 |
tttttgtttgtcatgtttttaagaagtctcacttcagagtaaagtctttcaatcattgcagggtcattgctgaaatttctgagcttaacttgattccatg |
22269853 |
T |
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| Q |
207 |
ctacttctattccttcttcattatcaaattctttatagacttttttacaagaacca |
262 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
22269852 |
ctacttctattccttcttcattatcaaatgctttatagacttttttacaagcacca |
22269797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 7 - 261
Target Start/End: Original strand, 45874357 - 45874614
Alignment:
| Q |
7 |
cttcctatactctctcaaattcccacttgtacaaacctcagtgatgaaattcagtgtgttatgatccttatccctccaaacattgtaaagtgcaatgatg |
106 |
Q |
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||||||||| |||||||| ||||||||||||||||| |||||||||||||| ||| |||||||||| | ||| |||||||||| |||||| ||||||||| |
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| T |
45874357 |
cttcctataatctctcaagttcccacttgtacaaacttcagtgatgaaattaagtatgttatgatcttcatctctccaaacatagtaaagggcaatgatg |
45874456 |
T |
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| Q |
107 |
tttttgtttgtcatgtttctaagaagtctcacttcagagtaaagtctttcaatcattgcagggtc---attgctgaaatttctgagcttaacttgattcc |
203 |
Q |
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|||| |||| ||||| ||||||| | ||| |||||||||||||| || | ||||||||||||||| ||| |||||||||||||| || |||||||||| |
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| T |
45874457 |
ttttcgtttctcatgcttctaagcaatctaacttcagagtaaagcctatgaatcattgcagggtcattattactgaaatttctgagtttgacttgattcc |
45874556 |
T |
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| Q |
204 |
atgctacttctattccttcttcattatcaaattctttatagacttttttacaagaacc |
261 |
Q |
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| || ||||||||||||||||| | ||||||| |||| || ||||||||||||||||| |
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| T |
45874557 |
acgcaacttctattccttcttcttgatcaaatgctttgtacacttttttacaagaacc |
45874614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 7 - 257
Target Start/End: Original strand, 10082990 - 10083240
Alignment:
| Q |
7 |
cttcctatactctctcaaattcccacttgtacaaacctcagtgatgaaattcagtgtgttatgatccttatccctccaaacattgtaaagtgcaatgatg |
106 |
Q |
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||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||| ||||||||||||||| |
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| T |
10082990 |
cttcctatattccctcaaattcccacttgtacaaacctcagtgatgaaattcagtgtattatgatcatcatccctccaaacattataaagtgcaatgatg |
10083089 |
T |
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| Q |
107 |
tttttgtttgtcatgtttctaagaagtctcacttcagagtaaagtctttcaatcattgcagggtcattgctgaaatttctgagcttaacttgattccatg |
206 |
Q |
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||| |||| |||||| ||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||| | |
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| T |
10083090 |
tttctgttcgtcatgcttctaagtaatctcacttcagagtaaagtctatcaatcattgcagggtcattgctgaaattccgaagcttaacttgattccaag |
10083189 |
T |
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| Q |
207 |
ctacttctattccttcttcattatcaaattctttatagacttttttacaag |
257 |
Q |
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||||||||||||||||||| | ||||||| || |||| |||||||| |||| |
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| T |
10083190 |
ctacttctattccttcttcttgatcaaatgctctataaacttttttgcaag |
10083240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 7 - 225
Target Start/End: Original strand, 41245755 - 41245973
Alignment:
| Q |
7 |
cttcctatactctctcaaattcccacttgtacaaacctcagtgatgaaattcagtgtgttatgatccttatccctccaaacattgtaaagtgcaatgatg |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||| | | ||| ||||||||| | |||||| |||||||| |
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| T |
41245755 |
cttcctatactctctcaaattcccacttgtacaaacctcggtgatgaaattaagcgtgttgtttcgatcatcgctccaaacactataaagttcaatgatg |
41245854 |
T |
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| Q |
107 |
tttttgtttgtcatgtttctaagaagtctcacttcagagtaaagtctttcaatcattgcagggtcattgctgaaatttctgagcttaacttgattccatg |
206 |
Q |
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||||||||||||| | |||| | | ||||||||||| ||||| || || | ||| ||||| |||| | ||| ||||| ||||| ||||| ||||||| |
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| T |
41245855 |
tttttgtttgtcaagcttctcaataacctcacttcagaataaagcctctctaccatagcaggttcatcacagaagtttcttagcttcacttggttccatg |
41245954 |
T |
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| Q |
207 |
ctacttctattccttcttc |
225 |
Q |
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|||| |||||||||||||| |
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| T |
41245955 |
ctacctctattccttcttc |
41245973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 42725065 - 42725004
Alignment:
| Q |
173 |
ttgctgaaatttctgagcttaacttgattccatgctacttctattccttcttcattatcaaa |
234 |
Q |
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||||||||||| | || ||||||||||||||||| ||||| ||||||||||| | |||||| |
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| T |
42725065 |
ttgctgaaattccgaagtttaacttgattccatgcaacttcaattccttcttcttgatcaaa |
42725004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 222
Target Start/End: Original strand, 47006361 - 47006395
Alignment:
| Q |
188 |
agcttaacttgattccatgctacttctattccttc |
222 |
Q |
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| T |
47006361 |
agctttacttgattccatgctacttctattccttc |
47006395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0283 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0283
Description:
Target: scaffold0283; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 19039 - 18978
Alignment:
| Q |
173 |
ttgctgaaatttctgagcttaacttgattccatgctacttctattccttcttcattatcaaa |
234 |
Q |
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||||||||||| | || ||||||||||||||||| ||||| ||||||||||| | |||||| |
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| T |
19039 |
ttgctgaaattccgaagtttaacttgattccatgcaacttcaattccttcttcttgatcaaa |
18978 |
T |
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