View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1863_low_76 (Length: 272)

Name: NF1863_low_76
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1863_low_76
NF1863_low_76
[»] chr1 (13 HSPs)
chr1 (17-272)||(1815373-1815629)
chr1 (81-272)||(1843404-1843595)
chr1 (81-272)||(1857415-1857606)
chr1 (81-272)||(1869013-1869204)
chr1 (21-81)||(19326856-19326916)
chr1 (174-272)||(9161353-9161451)
chr1 (174-249)||(9170179-9170254)
chr1 (174-272)||(9199746-9199844)
chr1 (176-272)||(9119001-9119097)
chr1 (174-262)||(9218262-9218350)
chr1 (158-262)||(9229131-9229235)
chr1 (18-76)||(19330311-19330370)
chr1 (21-80)||(40524962-40525022)
[»] chr8 (5 HSPs)
chr8 (23-82)||(11686012-11686071)
chr8 (21-81)||(44206277-44206337)
chr8 (21-79)||(19177405-19177463)
chr8 (23-78)||(31343660-31343715)
chr8 (23-81)||(4863904-4863962)
[»] chr4 (1 HSPs)
chr4 (21-81)||(27442661-27442721)
[»] scaffold0655 (2 HSPs)
scaffold0655 (21-82)||(4205-4266)
scaffold0655 (21-81)||(6261-6321)
[»] chr2 (1 HSPs)
chr2 (21-82)||(39959414-39959475)


Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 272
Target Start/End: Original strand, 1815373 - 1815629
Alignment:
Q  17 ataggatacaacataattgcaggaaaatcattataactaattatgacaaatattctattctatcatcaccaagttcataaatgctagatgatgattcatg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  1815373 ataggatacaacataattgcaggaaaatcattataactaatttcgacaaatattcttttctatcatcaccaaattcataaatgctagatgatgattcatg 1815472  T
Q  117 aagcaagtaccg-actctcctctacatttgagtcatcattgatccaagagtgcttattcattaacctcattccctccaattccatagccacttccttcat 215  Q
    |||||||||  | |||||||||||||||   |||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1815473 aagcaagtagtggactctcctctacattaaggtctgcattgatccaagagtgcttatccattaacctcattccctccaattccatagccacttccttcat 1815572  T
Q  216 gcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctc 272  Q
    |||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||    
T  1815573 gcttggtctttcctcccctataagtctcaaacagttcgccgcaagaacagccacctc 1815629  T

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Target: chr1; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 81 - 272
Target Start/End: Complemental strand, 1843595 - 1843404
Alignment:
Q  81 atcaccaagttcataaatgctagatgatgattcatgaagcaagtaccgactctcctctacatttgagtcatcattgatccaagagtgcttattcattaac 180  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1843595 atcaccaggttcataaatgctagatgatgattcatgaagcaagtacctactctcctctacatttgagtcatctttgatccaagagtgcttattcattaac 1843496  T
Q  181 ctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctc 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1843495 ctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctc 1843404  T

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Target: chr1; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 81 - 272
Target Start/End: Complemental strand, 1857606 - 1857415
Alignment:
Q  81 atcaccaagttcataaatgctagatgatgattcatgaagcaagtaccgactctcctctacatttgagtcatcattgatccaagagtgcttattcattaac 180  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1857606 atcaccaggttcataaatgctagatgatgattcatgaagcaagtacctactctcctctacatttgagtcatctttgatccaagagtgcttattcattaac 1857507  T
Q  181 ctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctc 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1857506 ctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctc 1857415  T

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Target: chr1; HSP #4
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 81 - 272
Target Start/End: Complemental strand, 1869204 - 1869013
Alignment:
Q  81 atcaccaagttcataaatgctagatgatgattcatgaagcaagtaccgactctcctctacatttgagtcatcattgatccaagagtgcttattcattaac 180  Q
    ||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1869204 atcaccaggttcataaaagctagatgatgattcatgaagcaagaaccgactctcctctacatttgagtcatcattgatccaagagtgcttattcattaac 1869105  T
Q  181 ctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctc 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1869104 ctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctc 1869013  T

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Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 19326916 - 19326856
Alignment:
Q  21 gatacaacataattgcaggaaaatcattataactaattatgacaaatattctattctatca 81  Q
    |||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||    
T  19326916 gatacaacataattacaggaaaataattataactaattatgactaatattctattctatca 19326856  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 174 - 272
Target Start/End: Original strand, 9161353 - 9161451
Alignment:
Q  174 cattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctc 272  Q
    ||||||||| || || ||||| ||||| ||||||||||||||||| || ||||| |||||||| |||||||||||| | || ||||||| ||| |||||    
T  9161353 cattaaccttataccatccaactccattgccacttccttcatgctaggcctttcatcccctcttagtctcaaacaccttgctgcaagaatagcaacctc 9161451  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 249
Target Start/End: Original strand, 9170179 - 9170254
Alignment:
Q  174 cattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacac 249  Q
    ||||||||| || || ||||| ||||| |||||||||||||| |  |||||||| |||||||||||||| ||||||    
T  9170179 cattaaccttatgccatccaactccattgccacttccttcatacaaggtctttcatcccctctaagtcttaaacac 9170254  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 272
Target Start/End: Original strand, 9199746 - 9199844
Alignment:
Q  174 cattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctc 272  Q
    ||||||||| || || ||||| |||||||| |||||| |||| || |||||||| || ||||||||||| |||||| | || ||||||| ||| |||||    
T  9199746 cattaaccttataccatccaactccatagctacttccctcatactaggtctttcatcacctctaagtcttaaacaccttgcagcaagaatagcaacctc 9199844  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 272
Target Start/End: Complemental strand, 9119097 - 9119001
Alignment:
Q  176 ttaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctc 272  Q
    ||||||| || || ||||| |||||||| | ||||||||| || |||||||| || |||| ||||||||||||| | || ||||||| ||| |||||    
T  9119097 ttaaccttataccatccaactccatagctatttccttcatactaggtctttcctctcctcgaagtctcaaacaccttgctgcaagaatagcaacctc 9119001  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 262
Target Start/End: Original strand, 9218262 - 9218350
Alignment:
Q  174 cattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaa 262  Q
    ||||||||| || || ||||| |||||||| |||||| |||| || |||||||| || ||||||||||| |||||| | || |||||||    
T  9218262 cattaaccttatgccatccaactccatagctacttccctcatactaggtctttcatcacctctaagtcttaaacaccttgcagcaagaa 9218350  T

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Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 262
Target Start/End: Original strand, 9229131 - 9229235
Alignment:
Q  158 tccaagagtgcttattcattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgc 257  Q
    |||||| |||||| | ||||||||| |  ||||| |  |||||||||||||| |||||||| |||||||| || ||| |||||||||| ||| | || ||    
T  9229131 tccaagggtgcttctccattaaccttaacccctctagctccatagccacttctttcatgctaggtctttcctcgcctttaagtctcaagcaccttgcagc 9229230  T
Q  258 aagaa 262  Q
    |||||    
T  9229231 aagaa 9229235  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 19330370 - 19330311
Alignment:
Q  18 taggatacaacataattgcagg-aaaatcattataactaattatgacaaatattctattc 76  Q
    ||||||||||||||||| |||| ||||| |||||| ||||||||||| |||||| |||||    
T  19330370 taggatacaacataattacagggaaaataattatacctaattatgactaatattttattc 19330311  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 40524962 - 40525022
Alignment:
Q  21 gatacaacataattgcaggaaaatcattataactaattatgac-aaatattctattctatc 80  Q
    ||||||||||||||  |||||||| ||||||   ||||||||| |||||||||||||||||    
T  40524962 gatacaacataattataggaaaataattatagtcaattatgacaaaatattctattctatc 40525022  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 11686012 - 11686071
Alignment:
Q  23 tacaacataattgcaggaaaatcattataactaattatgacaaatattctattctatcat 82  Q
    |||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||    
T  11686012 tacaacataattacagggaaatcattaaaactaattatgacaaatattctattctatcat 11686071  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 44206277 - 44206337
Alignment:
Q  21 gatacaacataattgcaggaaaatcattataactaattatgacaaatattctattctatca 81  Q
    |||||||||||||| ||||||||| |||||||||||||||||| |||| ||||||||||||    
T  44206277 gatacaacataattacaggaaaataattataactaattatgactaatactctattctatca 44206337  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 19177463 - 19177405
Alignment:
Q  21 gatacaacataattgcaggaaaatcattataactaattatgacaaatattctattctat 79  Q
    ||||||||||||||  |||||||| |||||||||||||||||| |||||||||||||||    
T  19177463 gatacaacataattagaggaaaataattataactaattatgactaatattctattctat 19177405  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 31343715 - 31343660
Alignment:
Q  23 tacaacataattgcaggaaaatcattataactaattatgacaaatattctattcta 78  Q
    |||||||||||| | || ||||||||| |||||||||||||||||||| |||||||    
T  31343715 tacaacataattacggggaaatcattaaaactaattatgacaaatattatattcta 31343660  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 4863904 - 4863962
Alignment:
Q  23 tacaacataattgcaggaaaatcattataactaattatgacaaatattctattctatca 81  Q
    |||| ||||||| |||| ||||||||| |||||||||||  ||||||||||||||||||    
T  4863904 tacagcataattacagggaaatcattaaaactaattatggtaaatattctattctatca 4863962  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 27442661 - 27442721
Alignment:
Q  21 gatacaacataattgcaggaaaatcattataactaattatgacaaatattctattctatca 81  Q
    |||||| ||||||| ||||||||| |||||||||||||||||| |||||||||||||||||    
T  27442661 gatacagcataattacaggaaaataattataactaattatgactaatattctattctatca 27442721  T

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Target: scaffold0655 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 4205 - 4266
Alignment:
Q  21 gatacaacataattgcaggaaaatcattataactaattatgacaaatattctattctatcat 82  Q
    |||||||||||||| |||| |||| |||||| | ||||||||||||||||||||||||||||    
T  4205 gatacaacataattacagggaaataattatagccaattatgacaaatattctattctatcat 4266  T

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Target: scaffold0655; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 6261 - 6321
Alignment:
Q  21 gatacaacataattgcaggaaaatcattataactaattatgacaaatattctattctatca 81  Q
    |||||||||||||| |||| |||| |||||| | |||||| ||||||||||||||||||||    
T  6261 gatacaacataattacagggaaataattatagccaattattacaaatattctattctatca 6321  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 39959475 - 39959414
Alignment:
Q  21 gatacaacataattgcaggaaaatcattataactaattatgacaaatattctattctatcat 82  Q
    |||||| ||||||| ||| | ||||||||||| || | ||||||||||||||||||||||||    
T  39959475 gatacatcataattacagaataatcattataattagtcatgacaaatattctattctatcat 39959414  T

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