View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1863_low_81 (Length: 266)
Name: NF1863_low_81
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_low_81 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 20 - 254
Target Start/End: Original strand, 5728178 - 5728412
Alignment:
| Q |
20 |
catgattccactataataattttttcttagaagcttgatagaataattactctattttcagttaattttgcaactccactacatctcttattttataatt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5728178 |
catgattccactataataattttttcttagaagcttgatagaataattactctattttcagttaattttgtaactccactacatctcttattttataatt |
5728277 |
T |
|
| Q |
120 |
caagttattcaactcatcacttcctcaatgtttgatcttataactgattaattaattatcacttttaaaactttgtaatactcttcaacattttttattc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5728278 |
caagttattcaactcatcacttcctcaatgtttgatcttataactgattaattaattatcacttttaaaactttgtaatactcttcaacattttttattc |
5728377 |
T |
|
| Q |
220 |
tctgattaaaattttggagcttgttaagttatttt |
254 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5728378 |
tttgattaaaattttggagcttgttaagttatttt |
5728412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 122
Target Start/End: Complemental strand, 3806196 - 3806156
Alignment:
| Q |
82 |
taattttgcaactccactacatctcttattttataattcaa |
122 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||| |||| |
|
|
| T |
3806196 |
taattttgcaactccactacatcccttatttcataagtcaa |
3806156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University