View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1863_low_82 (Length: 262)
Name: NF1863_low_82
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_low_82 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 11 - 218
Target Start/End: Original strand, 13890338 - 13890541
Alignment:
| Q |
11 |
aatgagaatgactggtatcttcatttttgcgtaagaagaatttgatcatagcatagcatagcttggtaacgataaaagtgatgtttctgttcatgaaagt |
110 |
Q |
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| T |
13890338 |
aatgagaatgactagtatcttcatttttgcgtaagaagaatgtgatcatagcatagcatagcttggtaacgatga----gatatttctgttcatgaaagt |
13890433 |
T |
|
| Q |
111 |
tgaagaggttagtggcagtttcgaaagcggttcgaattgcgggaacctctcaattgtattcatatacatcatattaatctaaccattcatttcatgccac |
210 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13890434 |
tgaagaggttagtggcagttccgaaagcggttcgaattgcgggaacctatcaattgtattcatatacatcatattaatctaaccattcatttcatgccac |
13890533 |
T |
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| Q |
211 |
ttgtctct |
218 |
Q |
| |
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|||||||| |
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| T |
13890534 |
ttgtctct |
13890541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 11 - 218
Target Start/End: Original strand, 14030463 - 14030666
Alignment:
| Q |
11 |
aatgagaatgactggtatcttcatttttgcgtaagaagaatttgatcatagcatagcatagcttggtaacgataaaagtgatgtttctgttcatgaaagt |
110 |
Q |
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||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||| ||||||||||||||||| |
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| T |
14030463 |
aatgagaatgactagtatcttcatttttgcgtaagaagaatgtgatcatagcatagcatagcttggtaacgatga----gatatttctgttcatgaaagt |
14030558 |
T |
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| Q |
111 |
tgaagaggttagtggcagtttcgaaagcggttcgaattgcgggaacctctcaattgtattcatatacatcatattaatctaaccattcatttcatgccac |
210 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14030559 |
tgaagaggttagtggcagttccgaaagcggttcgaattgcgggaacctatcaattgtattcatatacatcatattaatctaaccattcatttcatgccac |
14030658 |
T |
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| Q |
211 |
ttgtctct |
218 |
Q |
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|||||||| |
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| T |
14030659 |
ttgtctct |
14030666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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