View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1863_low_86 (Length: 249)
Name: NF1863_low_86
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_low_86 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 10 - 249
Target Start/End: Original strand, 32552099 - 32552338
Alignment:
| Q |
10 |
atatgaataccatgcacaacaagatcacattccaaaagaataaagactaactcattgtttcatcaagtgctcatcttatttccctgttcacgagcaatgg |
109 |
Q |
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| T |
32552099 |
atatgaatactatgcacaacaagatcacattccaaaagaataaagactaactcattgtttcatcaagtgctcatcttatttccctgttcacgagcaatgg |
32552198 |
T |
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| Q |
110 |
aagcagaaagaattccaagactgcgatttaagtcagtcaatgcagattcacattcagagattatttttgtgacagaagaaggcccttcagaagtttcgga |
209 |
Q |
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| T |
32552199 |
aagcagaaagaattccaagactgcgatttaagtcagtcaatgcagattcacattcagagattatttttgtgacagaagaaggcccttcagaagtttcgga |
32552298 |
T |
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| Q |
210 |
agatccaaaagcaagagctgcgtgtgaatctctaagattt |
249 |
Q |
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| T |
32552299 |
agatcgaaaagcaagagctgcgtgtgaatctctaagattt |
32552338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 60 - 248
Target Start/End: Complemental strand, 17847208 - 17847020
Alignment:
| Q |
60 |
ctcattgtttcatcaagtgctcatcttatttccctgttcacgagcaatggaagcagaaagaattccaagactgcgatttaagtcagtcaatgcagattca |
159 |
Q |
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| T |
17847208 |
ctcattgtttcatcaaatgctcattttctctccatgttcacgagcaatggaagcagaaagaataccaagatctcgatttatgacagtcatttcagattca |
17847109 |
T |
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| Q |
160 |
cattcagagattatttttgtgacagaagaaggcccttcagaagtttcggaagatccaaaagcaagagctgcgtgtgaatctctaagatt |
248 |
Q |
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| T |
17847108 |
cattcagagattattcttgagacagaggaaggccctcctgatgtttcagaggatccaaaagcaagcgcagcgtgcgagtctcttagatt |
17847020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 60 - 248
Target Start/End: Complemental strand, 20415221 - 20415033
Alignment:
| Q |
60 |
ctcattgtttcatcaagtgctcatcttatttccctgttcacgagcaatggaagcagaaagaattccaagactgcgatttaagtcagtcaatgcagattca |
159 |
Q |
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| T |
20415221 |
ctcattgtttcatcaaatgctcattttctctccatgttcacgagcaatggaagcggaaagaattccaagatctcgatttatgactgtcatttcagattca |
20415122 |
T |
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| Q |
160 |
cattcagagattatttttgtgacagaagaaggcccttcagaagtttcggaagatccaaaagcaagagctgcgtgtgaatctctaagatt |
248 |
Q |
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| T |
20415121 |
cattcagagattattcttgagacagaagacggccctcctgatgtttcagaggatccaaaagcaagtgcagcgtgcgagtctcttagatt |
20415033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 60 - 248
Target Start/End: Complemental strand, 5312361 - 5312173
Alignment:
| Q |
60 |
ctcattgtttcatcaagtgctcatcttatttccctgttcacgagcaatggaagcagaaagaattccaagactgcgatttaagtcagtcaatgcagattca |
159 |
Q |
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|||||||||||||||| ||||||| || | ||| |||||||||||||||||||| ||||||||||||||| ||||||| | | |||| | |||||||| |
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| T |
5312361 |
ctcattgtttcatcaaatgctcattttctctccatgttcacgagcaatggaagcggaaagaattccaagatctcgatttatgactgtcatttcagattca |
5312262 |
T |
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| Q |
160 |
cattcagagattatttttgtgacagaagaaggcccttcagaagtttcggaagatccaaaagcaagagctgcgtgtgaatctctaagatt |
248 |
Q |
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| T |
5312261 |
cattcagagattattcttgagacagaagacggccctcctgatgtttcagaggatccaaaagcaagtgcagcgtgcgagtctcttagatt |
5312173 |
T |
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