View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1863_low_87 (Length: 249)

Name: NF1863_low_87
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1863_low_87
NF1863_low_87
[»] chr3 (6 HSPs)
chr3 (1-243)||(53984800-53985042)
chr3 (8-243)||(53971095-53971329)
chr3 (13-83)||(53059871-53059941)
chr3 (13-83)||(53062884-53062954)
chr3 (13-73)||(37419176-37419236)
chr3 (27-83)||(53071908-53071964)
[»] chr2 (1 HSPs)
chr2 (13-83)||(6688087-6688157)
[»] chr4 (1 HSPs)
chr4 (14-83)||(34036289-34036358)
[»] chr1 (1 HSPs)
chr1 (17-82)||(16163998-16164063)
[»] chr7 (3 HSPs)
chr7 (42-83)||(19935380-19935421)
chr7 (42-83)||(19966519-19966560)
chr7 (14-83)||(31014454-31014529)


Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 53985042 - 53984800
Alignment:
Q  1 aagttgcggcaggaagtggaagtggatgctagacgtgcttcaacatagtcccaaacttcaacatcttaccattcatcaggtttaagatatgataaggata 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53985042 aagttggggcaggaagtggaagtggatgctagacgtgcttcaacatagtcccaaacttcaacatcttaccattcatcaggtttaagatatgataaggata 53984943  T
Q  101 atttgacgatttaatttaatttggtagatctacctctacacacgtcttaatgctccctccatcttattacaggaaatagagaatggaatttatgaggaca 200  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53984942 atttgacgatttaatttaatttggtaaatctacctctacacacgtcttaatgctccctccatcttattacaggaaatagagaatggaatttatgaggaca 53984843  T
Q  201 tttggcactatccacaaaatattccgacgtgcatttcatctca 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  53984842 tttggcactatccacaaaatattccgacgtgcatttcatctca 53984800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 8 - 243
Target Start/End: Complemental strand, 53971329 - 53971095
Alignment:
Q  8 ggcaggaagtggaagtggatgctagacgtgcttcaacatagtcccaaacttcaacatcttaccattcatcaggtttaaga-tatgataaggataatttga 106  Q
    |||| |||||||| ||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||| | | | |||||| ||||||||||||    
T  53971329 ggcaagaagtggaggtggatgctagacgtgctctaacatagtccgaaacttcaacatcttaccattcatcaggtatgatactatgattaggataatttga 53971230  T
Q  107 cgatttaatttaatttggtagatctacctctacacacgtcttaatgctccctccatcttattacaggaaatagagaatggaatttatgaggacatttggc 206  Q
     ||||||||||||||||||| || |||||||  ||| |||||| | | |||||| |||||||  |||| || ||| |||||||||||||||||| |||||    
T  53971229 tgatttaatttaatttggtaaatatacctct--acatgtcttactaccccctccgtcttattgtaggagatggaggatggaatttatgaggacaattggc 53971132  T
Q  207 actatccacaaaatattccgacgtgcatttcatctca 243  Q
    |  | ||||||||| ||||||| || |||||||||||    
T  53971131 aggacccacaaaatgttccgacatgtatttcatctca 53971095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 53059871 - 53059941
Alignment:
Q  13 gaagtggaagtggatgctagacgtgcttcaacatagtcccaaacttcaacatcttaccattcatcaggttt 83  Q
    |||||||| ||||||||||||  ||||||| || | ||| || ||||||||||||| ||||||| ||||||    
T  53059871 gaagtggatgtggatgctagaaatgcttcagcacactccaaagcttcaacatcttatcattcatgaggttt 53059941  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 53062884 - 53062954
Alignment:
Q  13 gaagtggaagtggatgctagacgtgcttcaacatagtcccaaacttcaacatcttaccattcatcaggttt 83  Q
    |||||||| ||||||||||||  ||||||| || ||||| || ||| ||||||||| ||||||| ||||||    
T  53062884 gaagtggacgtggatgctagaaatgcttcagcacagtccaaagctttaacatcttatcattcatgaggttt 53062954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 37419176 - 37419236
Alignment:
Q  13 gaagtggaagtggatgctagacgtgcttcaacatagtcccaaacttcaacatcttaccatt 73  Q
    |||||||| ||||||||||||  |||||||| | ||||| || ||||||||||||| ||||    
T  37419176 gaagtggacgtggatgctagaaatgcttcaaaacagtccaaagcttcaacatcttatcatt 37419236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 53071908 - 53071964
Alignment:
Q  27 tgctagacgtgcttcaacatagtcccaaacttcaacatcttaccattcatcaggttt 83  Q
    |||||||  |||||||||| ||||| || ||||||||||||| ||||||| ||||||    
T  53071908 tgctagaaatgcttcaacacagtccaaagcttcaacatcttatcattcatgaggttt 53071964  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 6688087 - 6688157
Alignment:
Q  13 gaagtggaagtggatgctagacgtgcttcaacatagtcccaaacttcaacatcttaccattcatcaggttt 83  Q
    |||||||||||||||| ||||  |||||||||| |||||||| ||||||||||||| ||||||| ||||||    
T  6688087 gaagtggaagtggatggtagaaatgcttcaacacagtcccaagcttcaacatcttatcattcatgaggttt 6688157  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 34036289 - 34036358
Alignment:
Q  14 aagtggaagtggatgctagacgtgcttcaacatagtcccaaacttcaacatcttaccattcatcaggttt 83  Q
    ||||||| ||||||||||||  |||||||||| |||||||| ||||||||||||| ||||||| ||||||    
T  34036289 aagtggaggtggatgctagaaatgcttcaacacagtcccaagcttcaacatcttatcattcatgaggttt 34036358  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 16164063 - 16163998
Alignment:
Q  17 tggaagtggatgctagacgtgcttcaacatagtcccaaacttcaacatcttaccattcatcaggtt 82  Q
    |||| |||||||||||| ||||||||||| || ||||| ||| |||||||| ||||||||||||||    
T  16164063 tggaggtggatgctagaagtgcttcaacagaggcccaagcttgaacatcttgccattcatcaggtt 16163998  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 19935380 - 19935421
Alignment:
Q  42 aacatagtcccaaacttcaacatcttaccattcatcaggttt 83  Q
    ||||| |||||||||||||| |||||||||||||||||||||    
T  19935380 aacattgtcccaaacttcaaaatcttaccattcatcaggttt 19935421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 19966519 - 19966560
Alignment:
Q  42 aacatagtcccaaacttcaacatcttaccattcatcaggttt 83  Q
    ||||| |||||||||||||| |||||||||||||||||||||    
T  19966519 aacattgtcccaaacttcaaaatcttaccattcatcaggttt 19966560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 31014454 - 31014529
Alignment:
Q  14 aagtggaagtggatgctagacgt------gcttcaacatagtcccaaacttcaacatcttaccattcatcaggttt 83  Q
    |||||||||||||||||||| ||      ||||||||| |||||||| ||||||||||||| ||||||| ||||||    
T  31014454 aagtggaagtggatgctagaagtagaaatgcttcaacacagtcccaagcttcaacatcttatcattcataaggttt 31014529  T

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