View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1863_low_9 (Length: 558)

Name: NF1863_low_9
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1863_low_9
NF1863_low_9
[»] chr4 (10 HSPs)
chr4 (1-410)||(35334985-35335394)
chr4 (1-164)||(35335492-35335658)
chr4 (8-146)||(35335378-35335519)
chr4 (285-375)||(16592167-16592257)
chr4 (274-329)||(35327002-35327057)
chr4 (285-360)||(16602671-16602746)
chr4 (291-324)||(5342486-5342519)
chr4 (46-112)||(16592030-16592096)
chr4 (26-112)||(16602460-16602546)
chr4 (510-552)||(35334843-35334885)
[»] chr3 (1 HSPs)
chr3 (277-342)||(3175390-3175455)
[»] chr5 (1 HSPs)
chr5 (277-323)||(20964465-20964511)
[»] chr8 (1 HSPs)
chr8 (291-323)||(38542112-38542144)


Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 35335394 - 35334985
Alignment:
Q  1 gcccctgttcacaaacatgttccagtacatcctcctcgccatgcaaaacctccaactcatcacaaccatcaacgccctctaactcatgcccctattcaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  35335394 gcccctgttcacaaacatgttccagtacatcctcctcgccatgcaaaacctccaactcatcacaaccatcaacgccctctaactcatgcgcctattcaac 35335295  T
Q  101 caccaacacatccccaccctcctgctcacgcccctgctcacaaacacattccaattcaccctccattccacgcccatgtacctactaaatctccaactcc 200  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35335294 caccaacacatcaccaccctcctgctcacgcccctgctcacaaacacattccaattcaccctccattccacgcccatgtacctactaaatctccaactcc 35335195  T
Q  201 caaccctcacccccaccatcatcacactcctgctcttgcccctgctcacacaccactgcgttcaattttccatcctagaagcttaatagctgttcaaggt 300  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35335194 caaccctcacccccgccatcatcacactcctgctcttgcccctgctcacacaccactgcgttcaattttccatcctagaagcttaatagctgttcaaggt 35335095  T
Q  301 gttgtttatgtcaaatcttgcaagcatgccggaggtgacacccttttgggtgctacatctataattggtttgtctcttaactttcatgtttgctttgttc 400  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  35335094 gttgtttatgtcaaatcttgcaagcatgctggaggtgacacccttttgggtgctacatctataattggtttgtctcttaactttcatgattgctttgttc 35334995  T
Q  401 tttcatatca 410  Q
    ||||||||||    
T  35334994 tttcatatca 35334985  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 35335658 - 35335492
Alignment:
Q  1 gcccctgttcacaaacatgttccagtacatcctcctcgccatgcaaaacctccaactcatcacaaccatcaacgccctctaactcatgcccctattcaac 100  Q
    |||||||||||||||||||||||||| |||||||||| |||||| ||||||||||| ||||||   ||||||| | |||   ||||| ||||||||||||    
T  35335658 gcccctgttcacaaacatgttccagttcatcctcctcaccatgctaaacctccaacccatcaccgtcatcaacacactcctgctcattcccctattcaac 35335559  T
Q  101 caccaacacatccc---caccctcctgctcacgcccctgctcacaaacacattccaattcaccctcc 164  Q
    | |||||||||| |   ||| |||||||||| || |||  |||||||||  ||||| |||| |||||    
T  35335558 ctccaacacatcgccatcactctcctgctcatgctcctattcacaaacatgttccagttcatcctcc 35335492  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 8 - 146
Target Start/End: Complemental strand, 35335519 - 35335378
Alignment:
Q  8 ttcacaaacatgttccagtacatcctcctcgccatgcaaaacctccaactcatcacaaccatcaacgccctctaactcatgcccctattcaaccaccaac 107  Q
    ||||||||||||||||||| ||||||||||  ||||| ||||||||||| |||||   |||||||| |||||  |||||| ||||| ||||||| |||||    
T  35335519 ttcacaaacatgttccagttcatcctcctcatcatgctaaacctccaacccatcatcgccatcaacaccctcctactcattcccctgttcaacctccaac 35335420  T
Q  108 acatccccac---cctcctgctcacgcccctgctcacaaaca 146  Q
     |||| ||||   ||||||||||| ||||||| |||||||||    
T  35335419 gcatcaccaccagcctcctgctcatgcccctgttcacaaaca 35335378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 285 - 375
Target Start/End: Original strand, 16592167 - 16592257
Alignment:
Q  285 aatagctgttcaaggtgttgtttatgtcaaatcttgcaagcatgccggaggtgacacccttttgggtgctacatctataattggtttgtct 375  Q
    |||||||||| |||||||||||||||||||||| ||||||||||| |||| ||||||||||| |  |||||||||| | | ||||||||||    
T  16592167 aatagctgttgaaggtgttgtttatgtcaaatcatgcaagcatgctggagttgacaccctttcgaatgctacatctcttaatggtttgtct 16592257  T

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Target: chr4; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 274 - 329
Target Start/End: Complemental strand, 35327057 - 35327002
Alignment:
Q  274 cctagaagcttaatagctgttcaaggtgttgtttatgtcaaatcttgcaagcatgc 329  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  35327057 cctagaagctttatagctgttcaaggtgttgtttatgtcaaatcttgcaagtatgc 35327002  T

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Target: chr4; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 285 - 360
Target Start/End: Original strand, 16602671 - 16602746
Alignment:
Q  285 aatagctgttcaaggtgttgtttatgtcaaatcttgcaagcatgccggaggtgacacccttttgggtgctacatct 360  Q
    |||||||||| |||||||||||||||||||||| ||||||||||| |||| ||| ||||||| |  ||||||||||    
T  16602671 aatagctgttgaaggtgttgtttatgtcaaatcatgcaagcatgctggagttgaaaccctttcgaatgctacatct 16602746  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 291 - 324
Target Start/End: Original strand, 5342486 - 5342519
Alignment:
Q  291 tgttcaaggtgttgtttatgtcaaatcttgcaag 324  Q
    ||||||||||||||||||||||||||||||||||    
T  5342486 tgttcaaggtgttgtttatgtcaaatcttgcaag 5342519  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 46 - 112
Target Start/End: Original strand, 16592030 - 16592096
Alignment:
Q  46 aaacctccaactcatcacaaccatcaacgccctctaactcatgcccctattcaaccaccaacacatc 112  Q
    ||||||||||| |||||| ||||||||| |||||   ||||||||||| ||||||| ||||| ||||    
T  16592030 aaacctccaacccatcaccaccatcaacaccctcctgctcatgcccctgttcaacctccaacccatc 16592096  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 16602460 - 16602546
Alignment:
Q  26 tacatcctcctcgccatgcaaaacctccaactcatcacaaccatcaacgccctctaactcatgcccctattcaaccaccaacacatc 112  Q
    |||| ||| ||| |||||| ||||||||||| |||| | ||||||||| |||||   ||||||||||| ||||||| ||||| ||||    
T  16602460 tacacccttctcaccatgctaaacctccaacccatccctaccatcaacaccctcctgctcatgcccctgttcaacctccaacccatc 16602546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 510 - 552
Target Start/End: Complemental strand, 35334885 - 35334843
Alignment:
Q  510 aataaagttgcatgattatcgataatggacatattttcttgga 552  Q
    |||||||||||||||||| ||| |||||||||||||| |||||    
T  35334885 aataaagttgcatgattaccgagaatggacatattttgttgga 35334843  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 277 - 342
Target Start/End: Complemental strand, 3175455 - 3175390
Alignment:
Q  277 agaagcttaatagctgttcaaggtgttgtttatgtcaaatcttgcaagcatgccggaggtgacacc 342  Q
    |||||||| ||||||||| |||||||||||||||||||||| ||||| ||| |||| | |||||||    
T  3175455 agaagcttgatagctgttgaaggtgttgtttatgtcaaatcatgcaaccataccggtgttgacacc 3175390  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 323
Target Start/End: Original strand, 20964465 - 20964511
Alignment:
Q  277 agaagcttaatagctgttcaaggtgttgtttatgtcaaatcttgcaa 323  Q
    |||||||| |||| |||| |||| |||||||||||||||||||||||    
T  20964465 agaagcttgatagttgttgaaggagttgtttatgtcaaatcttgcaa 20964511  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 291 - 323
Target Start/End: Complemental strand, 38542144 - 38542112
Alignment:
Q  291 tgttcaaggtgttgtttatgtcaaatcttgcaa 323  Q
    ||||| |||||||||||||||||||||||||||    
T  38542144 tgttcgaggtgttgtttatgtcaaatcttgcaa 38542112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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