View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1863_low_91 (Length: 247)
Name: NF1863_low_91
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_low_91 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 25160011 - 25159827
Alignment:
| Q |
1 |
acaagaaaaagtataaagaatctcaaaagggtgtaataggcataaccttagtagcgaattggtatcttccactctcagattccaaatccgaccaaaaagc |
100 |
Q |
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| T |
25160011 |
acaagaaaaagtataaagaatctcaaaagggtgtaataggcataaccttagtaacgaattggtatcttccactctcagattccaaatccgaccaaaaagc |
25159912 |
T |
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| Q |
101 |
agcagaaagagcaattgattttatgtatggatggtaagaactcatatataactctttccatttttatttatcttcaaaaggaaac |
185 |
Q |
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| T |
25159911 |
agcagaaagagcaattgattttatgtatggatggtaagaactcatctataactctttccatttttatttatcttcaaaaggaaac |
25159827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 139
Target Start/End: Original strand, 9214119 - 9214236
Alignment:
| Q |
22 |
ctcaaaagggtgtaataggcataaccttagtagcgaattggtatcttccactctcagattccaaatccgaccaaaaagcagcagaaagagcaattgattt |
121 |
Q |
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| T |
9214119 |
ctcaaaatggtgtaataggaataaccttggtagctaactggtacctgccactctcagattcgaaatccgaccagaaagctgctgaaagagctgttgactt |
9214218 |
T |
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| Q |
122 |
tatgtatggatggtaaga |
139 |
Q |
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| T |
9214219 |
catgtatggatggtaaga |
9214236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 49
Target Start/End: Complemental strand, 42166961 - 42166930
Alignment:
| Q |
18 |
gaatctcaaaagggtgtaataggcataacctt |
49 |
Q |
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| T |
42166961 |
gaatctcaaaagggtgtaataggcataacctt |
42166930 |
T |
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