View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1863_low_93 (Length: 245)
Name: NF1863_low_93
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_low_93 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 50752109 - 50751883
Alignment:
| Q |
1 |
ttgtcttccattggattgtgtttagcaaccatcatgcacaaagatcatggattcaacaaaaacccaagtctcaacactatgaattgatagtaaaattgat |
100 |
Q |
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| T |
50752109 |
ttgtcttccattggattgtgtttagcaaccatcatgcacaaagatcatggattcaacaaaaacccaagtctcaacactatgaattgatagtaaaattgat |
50752010 |
T |
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| Q |
101 |
gagaaattatataacaataatattgaacaagggttttagagagaagaagataatttttgtaaaaaagaagaagaaaaatgtgattggtacaaagatcaat |
200 |
Q |
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| T |
50752009 |
gagaaattatataacaataatattgaacaagggttttagagagaagaagataatttttgtaaaaaagaagaagaaaaatgtgattggtacaaagatcaat |
50751910 |
T |
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| Q |
201 |
caatcaatagcaattagtaaaagtaac |
227 |
Q |
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| T |
50751909 |
caatcaatagcaattagtaaaagtaac |
50751883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 155
Target Start/End: Complemental strand, 223899 - 223865
Alignment:
| Q |
121 |
tattgaacaagggttttagagagaagaagataatt |
155 |
Q |
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| T |
223899 |
tattgaacaagagttttagagagaagaagataatt |
223865 |
T |
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