View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1863_low_96 (Length: 243)
Name: NF1863_low_96
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_low_96 |
 | |
|
| [»] scaffold0511 (1 HSPs) |
| | |
|
| [»] scaffold0230 (1 HSPs) |
| | |
|
| [»] scaffold0133 (2 HSPs) |
| | |
|
| [»] scaffold0144 (1 HSPs) |
| | |
|
| [»] scaffold0256 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 7052902 - 7052674
Alignment:
| Q |
1 |
ccacaacttcagtgatgacagaagtagtttggcgccattcatcatctcctcgctgacgctcctctatgactcccacttgtaatccaaacttgatcctttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7052902 |
ccacaacttcagtgatgacagaagtagtttggcgccattcatcatctcctcgctgacgctcctctatgactcccacttgtaatccaaacttgatcctttc |
7052803 |
T |
|
| Q |
101 |
ttcagcaataacatcaatctttttagcaacctctttcatcctctttccaatgtcacgccgagccaaaatcttcttaggatggaaacgggtgatccacttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7052802 |
ttcagcaataacatcaatctttttagcaacctctttcatcctctttccaatgtcacgccgagccaaaatcttcttaggatggaaacgggtgatccacttg |
7052703 |
T |
|
| Q |
201 |
ttgtctccacagggttttgatgttattga |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
7052702 |
ttgtctccacagggttttgatgttattga |
7052674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 8 - 205
Target Start/End: Complemental strand, 38938988 - 38938794
Alignment:
| Q |
8 |
ttcagtgatgacagaagtagtttggcgccattcatcatctcctcgctgacgctcctctatgactcccacttgtaatccaaacttgatcctttcttcagca |
107 |
Q |
| |
|
||||||||||||||| ||||||| ||||| || |||||| || | || |||||| ||||| |||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
38938988 |
ttcagtgatgacagaggtagttttccgccactcttcatcttctggttggcgctcc---atgacccccacttgtaatccgaacttcatcctttcttcagca |
38938892 |
T |
|
| Q |
108 |
ataacatcaatctttttagcaacctctttcatcctctttccaatgtcacgccgagccaaaatcttcttaggatggaaacgggtgatccacttgttgtc |
205 |
Q |
| |
|
||| |||| ||||||||||||||||| ||||||||||||||||||| || ||||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
38938891 |
atatcatcgatctttttagcaacctccttcatcctctttccaatgttgcgacgagccaaaatcttcagaggatggaaacgagtgatccacttgttgtc |
38938794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 8 - 228
Target Start/End: Complemental strand, 18872819 - 18872599
Alignment:
| Q |
8 |
ttcagtgatgacagaagtagtttggcgccattcatcatctcctcgctgacgctcctctatgactcccacttgtaatccaaacttgatcctttcttcagca |
107 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||| || || ||||| |||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
18872819 |
ttcagtgatgacagaaaaagtttggcgccatttatcatctcctcgttggcgatcctccatgactaccgcttgtaatccaaacttgatcctttcttcagca |
18872720 |
T |
|
| Q |
108 |
ataacatcaatctttttagcaacctctttcatcctctttccaatgtcacgccgagccaaaatcttcttaggatggaaacgggtgatccacttgttgtctc |
207 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18872719 |
ataacatcaatctttttagcaacctccttcatcctctttccaatatcccgacgagccaaaatcttcttaggatggaaacgggtgatccacttgttgtctc |
18872620 |
T |
|
| Q |
208 |
cacagggttttgatgttattg |
228 |
Q |
| |
|
|| | |||||||||||||| |
|
|
| T |
18872619 |
catgtgcttttgatgttattg |
18872599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 8 - 228
Target Start/End: Complemental strand, 18805825 - 18805605
Alignment:
| Q |
8 |
ttcagtgatgacagaagtagtttggcgccattcatcatctcctcgctgacgctcctctatgactcccacttgtaatccaaacttgatcctttcttcagca |
107 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||| |||||||||||| || || ||||| |||||| || |||| ||||||||||||||||||||||||||| |
|
|
| T |
18805825 |
ttcagtgatgactgaattagtttggcgccatttatcatctcctcgttggcgatcctccatgactaccgcttgcaatccaaacttgatcctttcttcagca |
18805726 |
T |
|
| Q |
108 |
ataacatcaatctttttagcaacctctttcatcctctttccaatgtcacgccgagccaaaatcttcttaggatggaaacgggtgatccacttgttgtctc |
207 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18805725 |
ataacatcaatctttttagcaacctccttcatcctctttccaatatcccgacgagccaaaatcttcttaggatggaaacgggtgatccacttgttgtctc |
18805626 |
T |
|
| Q |
208 |
cacagggttttgatgttattg |
228 |
Q |
| |
|
|| | |||||||||||||| |
|
|
| T |
18805625 |
catgtgcttttgatgttattg |
18805605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 8 - 228
Target Start/End: Complemental strand, 18794256 - 18794036
Alignment:
| Q |
8 |
ttcagtgatgacagaagtagtttggcgccattcatcatctcctcgctgacgctcctctatgactcccacttgtaatccaaacttgatcctttcttcagca |
107 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||||| || || ||||| |||||| || |||| ||||||||||||||||||||||||||| |
|
|
| T |
18794256 |
ttcagtgacgactgaagtagtttggcgccattcatcatctcctcgttggcgatcctccatgactaccgcttgcaatccaaacttgatcctttcttcagca |
18794157 |
T |
|
| Q |
108 |
ataacatcaatctttttagcaacctctttcatcctctttccaatgtcacgccgagccaaaatcttcttaggatggaaacgggtgatccacttgttgtctc |
207 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| | | ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
18794156 |
ataacatcaatctttttagcaacctccttcatcctctttccaatattcctacgagccaaaatcttcttaggatgtaaacgggtgatccacttgttgtctc |
18794057 |
T |
|
| Q |
208 |
cacagggttttgatgttattg |
228 |
Q |
| |
|
|| | |||||||||||||| |
|
|
| T |
18794056 |
catgtgcttttgatgttattg |
18794036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 8 - 209
Target Start/End: Complemental strand, 18870342 - 18870141
Alignment:
| Q |
8 |
ttcagtgatgacagaagtagtttggcgccattcatcatctcctcgctgacgctcctctatgactcccacttgtaatccaaacttgatcctttcttcagca |
107 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||| ||||||| || || ||||| |||||| ||||||||||||| || |||||||||||||||||| |
|
|
| T |
18870342 |
ttcagtgacgacagaagtagtttggcgattttcatcaactcctcgttggcgatcctccatgactaccacttgtaatcctaatttgatcctttcttcagca |
18870243 |
T |
|
| Q |
108 |
ataacatcaatctttttagcaacctctttcatcctctttccaatgtcacgccgagccaaaatcttcttaggatggaaacgggtgatccacttgttgtctc |
207 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| || | |||||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
18870242 |
ataacatcaatctttttagcaacctccttcatcctctttccaatatccctacgagccaaaatcatcttaggatggaaactggtgatccacttgttgtctc |
18870143 |
T |
|
| Q |
208 |
ca |
209 |
Q |
| |
|
|| |
|
|
| T |
18870142 |
ca |
18870141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 12 - 229
Target Start/End: Original strand, 16788495 - 16788712
Alignment:
| Q |
12 |
gtgatgacagaagtagtttggcgccattcatcatctcctcgctgacgctcctctatgactcccacttgtaatccaaacttgatcctttcttcagcaataa |
111 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||| | ||||| |||||||| ||| | ||||||||||| |||||| |||| ||||| |||| |||||||| |
|
|
| T |
16788495 |
gtgacgacagaagtagtttggcgccactcatcagcacctcgttgacgctcttctgttactcccacttgcaatccatacttcatcctgtctttagcaataa |
16788594 |
T |
|
| Q |
112 |
catcaatctttttagcaacctctttcatcctctttccaatgtcacgccgagccaaaatcttcttaggatggaaacgggtgatccacttgttgtctccaca |
211 |
Q |
| |
|
| |||||||||||||||||| | |||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
16788595 |
cgtcaatctttttagcaaccgccttcatcctctttccaacgtcacgctgagccaaaatcttcttaggaaggaaacgggtgatgcacttgttgtctccatg |
16788694 |
T |
|
| Q |
212 |
gggttttgatgttattga |
229 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
16788695 |
tgcttttgatgttattga |
16788712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 16658544 - 16658736
Alignment:
| Q |
20 |
agaagtagtttggcgccattcatcatctcctcgctgacgctcctctatgactcccac---ttgtaatccaaacttgatcctttcttcagcaataacatca |
116 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| || |||||||| |||||||||| ||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
16658544 |
agaaatagtttggcgccattcatcatctcctcgttgctgctcctctgtgactcccaccagttgaaatccaaacttgatcctttcttcagcaatatcatca |
16658643 |
T |
|
| Q |
117 |
atctttttagcaacctctttcatcctctttccaatgtcacgccgagccaaaatcttcttaggatggaaacgggtgatccacttgttgtctcca |
209 |
Q |
| |
|
||| ||||||||||||| ||||||||||||||||||| ||| ||||||||||||||| ||||||| |||| ||||| ||||||||| ||||| |
|
|
| T |
16658644 |
atccttttagcaacctccttcatcctctttccaatgttacgacgagccaaaatcttcataggatgaaaactagtgatgcacttgttgcctcca |
16658736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 20 - 209
Target Start/End: Complemental strand, 16867631 - 16867439
Alignment:
| Q |
20 |
agaagtagtttggcgccattcatcatctcctcgctgacgctcctctatgactcccacttgt---aatccaaacttgatcctttcttcagcaataacatca |
116 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| || |||||||| ||||||||||| || |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
16867631 |
agaaatagtttggcgccattcatcatctcctcgttggtgctcctctgtgactcccactagttgaaatccaaacttgatcctttcttcagcaatatcatca |
16867532 |
T |
|
| Q |
117 |
atctttttagcaacctctttcatcctctttccaatgtcacgccgagccaaaatcttcttaggatggaaacgggtgatccacttgttgtctcca |
209 |
Q |
| |
|
||| ||||||||||||| ||||||||||||||||||| || ||||||||||||||| |||||||||||| ||||| ||||||||| ||||| |
|
|
| T |
16867531 |
atccttttagcaacctccttcatcctctttccaatgttgcgacgagccaaaatcttcataggatggaaactagtgatgcacttgttgcctcca |
16867439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 20 - 186
Target Start/End: Original strand, 16987992 - 16988161
Alignment:
| Q |
20 |
agaagtagtttggcgccattcatcatctcctcgctgacgctcctctatgactcccacttgt---aatccaaacttgatcctttcttcagcaataacatca |
116 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
16987992 |
agaaatagtttggcgccattcatcatctcctcgttgatgctcctccatgactcccacttgttgaaatccaaacttgatcctttcttcagcaatatcatca |
16988091 |
T |
|
| Q |
117 |
atctttttagcaacctctttcatcctctttccaatgtcacgccgagccaaaatcttcttaggatggaaac |
186 |
Q |
| |
|
|||||||||||||| | ||||||||||| ||||||| || |||||||||||||| |||||||||||| |
|
|
| T |
16988092 |
atctttttagcaactttcttcatcctcttcccaatgttgcgatgagccaaaatcttcataggatggaaac |
16988161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 90 - 209
Target Start/End: Complemental strand, 18587255 - 18587136
Alignment:
| Q |
90 |
ttgatcctttcttcagcaataacatcaatctttttagcaacctctttcatcctctttccaatgtcacgccgagccaaaatcttcttaggatggaaacggg |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || | |||||||||||| |||||||||||||||||| |
|
|
| T |
18587255 |
ttgatcctttcttcagcaataacatcaatctttttagcaacctccttcatcctctttccaatatccctacgagccaaaatcatcttaggatggaaacggg |
18587156 |
T |
|
| Q |
190 |
tgatccacttgttgtctcca |
209 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
18587155 |
tgatccacttgttgtctcca |
18587136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 16838215 - 16838402
Alignment:
| Q |
19 |
cagaagtagtttggcgccattcatcatctcctcgctgacgctcctctatgactcccact---tgtaatccaaacttgatcctttcttcagcaataacatc |
115 |
Q |
| |
|
||||||||||| || |||||||||||||||||| || ||||||| ||||||||||| || ||||||||||| ||||||||||||||||| |||| |
|
|
| T |
16838215 |
cagaagtagttaggatccattcatcatctcctcgttggtgctcctccgtgactcccactgattgaaatccaaactttttcctttcttcagcaatatcatc |
16838314 |
T |
|
| Q |
116 |
aatctttttagcaacctctttcatcctctttccaatgtcacgccgagccaaaatcttcttaggatggaaacgggtgatccacttgttg |
203 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||| || ||||||||||||||| | ||||||||||||||||| ||||||||| |
|
|
| T |
16838315 |
aatccttttagcaacctccttcatcctctttccaatgttgcgacgagccaaaatcttcattggatggaaacgggtgatgcacttgttg |
16838402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 16797703 - 16797890
Alignment:
| Q |
19 |
cagaagtagtttggcgccattcatcatctcctcgctgacgctcctctatgactcccact---tgtaatccaaacttgatcctttcttcagcaataacatc |
115 |
Q |
| |
|
||||||||||| || |||||||||||||||||| || ||||||| ||||||||||| || ||||||||||| ||||||||||||||||| |||| |
|
|
| T |
16797703 |
cagaagtagttaggatccattcatcatctcctcgttggtgctcctccgtgactcccactgattgaaatccaaactttttcctttcttcagcaatatcatc |
16797802 |
T |
|
| Q |
116 |
aatctttttagcaacctctttcatcctctttccaatgtcacgccgagccaaaatcttcttaggatggaaacgggtgatccacttgttg |
203 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||| || ||||||||||| ||| | ||||| ||||||||||| ||||||||| |
|
|
| T |
16797803 |
aatccttttagcaacctccttcatcctctttccaatgttgcgacgagccaaaattttcattggatgaaaacgggtgatgcacttgttg |
16797890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 8 - 205
Target Start/End: Original strand, 16781631 - 16781825
Alignment:
| Q |
8 |
ttcagtgatgacagaagtagtttggcgccattcatcatctcctcgctgacgctcctctatgactcccacttgtaatccaaacttgatcctttcttcagca |
107 |
Q |
| |
|
||||||||||||||| |||||||| ||||| || |||||| || | || ||||| ||||| ||||| || ||||| ||||| ||||||||||||||| |
|
|
| T |
16781631 |
ttcagtgatgacagaggtagtttgccgccactcttcatcttctggttggtgctcc---atgacccccacctgcaatccgaacttcatcctttcttcagca |
16781727 |
T |
|
| Q |
108 |
ataacatcaatctttttagcaacctctttcatcctctttccaatgtcacgccgagccaaaatcttcttaggatggaaacgggtgatccacttgttgtc |
205 |
Q |
| |
|
||| |||| |||| |||||||| ||| ||||||||||||||||||| || ||||||||||||||| ||||||||||||| ||||||| ||||||||| |
|
|
| T |
16781728 |
atatcatcgatctctttagcaatctccttcatcctctttccaatgttgcgacgagccaaaatcttcataggatggaaacgagtgatccgcttgttgtc |
16781825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 38 - 203
Target Start/End: Original strand, 17070059 - 17070227
Alignment:
| Q |
38 |
ttcatcatctcctcgctgacgctcctctatgactcccac---ttgtaatccaaacttgatcctttcttcagcaataacatcaatctttttagcaacctct |
134 |
Q |
| |
|
||||||||||||||| || ||||||| |||||||||| ||| |||||| ||| ||||||||||| ||||||| | |||||| ||||||||||||| |
|
|
| T |
17070059 |
ttcatcatctcctcgttggtgctcctccgtgactcccaccggttgaaatccatactcgatcctttctttagcaatatcgtcaatccttttagcaacctcc |
17070158 |
T |
|
| Q |
135 |
ttcatcctctttccaatgtcacgccgagccaaaatcttcttaggatggaaacgggtgatccacttgttg |
203 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||| | ||||||||||||||||| ||||||||| |
|
|
| T |
17070159 |
ttcatcctctttccaatgttgcgatgagccaaaatcttcattggatggaaacgggtgatgcacttgttg |
17070227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 16844366 - 16844532
Alignment:
| Q |
15 |
atgacagaagtagtttggcgccattcatcatctcctcgctgacgctcctctatgactcccacttgtaatccaaacttgatcctttcttcagcaataacat |
114 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| | | ||||||||| | | ||| |||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
16844366 |
atgaaagaagtagtttggcgccattcatcatcttcaagatgacgctccacgtt---tccagattgtaatccaaacttgattctttcttcagcaatagcat |
16844462 |
T |
|
| Q |
115 |
caatctttttagcaacctctttcatcctctttccaatgtcacgccgagccaaaatcttcttaggatggaa |
184 |
Q |
| |
|
||||||||| ||| |||||||||||| ||||||||||| |||| ||||| | | ||||||| ||||||| |
|
|
| T |
16844463 |
caatcttttcagctacctctttcatcttctttccaatgccacgacgagcatatagcttcttaagatggaa |
16844532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 9885 - 10105
Alignment:
| Q |
8 |
ttcagtgatgacagaagtagtttggcgccattcatcatctcctcgctgacgctcctctatgactcccacttgtaatccaaacttgatcctttcttcagca |
107 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||||| || || ||||| |||||| || |||| ||||||||||||||||||||||||||| |
|
|
| T |
9885 |
ttcagtgacgactgaagtagtttggcgccattcatcatctcctcgttggcgatcctccatgactaccgcttgcaatccaaacttgatcctttcttcagca |
9984 |
T |
|
| Q |
108 |
ataacatcaatctttttagcaacctctttcatcctctttccaatgtcacgccgagccaaaatcttcttaggatggaaacgggtgatccacttgttgtctc |
207 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| | | ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
9985 |
ataacatcaatctttttagcaacctccttcatcctctttccaatatgccaacgagccaaaatcttcttaggatgaaaacgggtgatccacttgttgtctc |
10084 |
T |
|
| Q |
208 |
cacagggttttgatgttattg |
228 |
Q |
| |
|
|| | |||||||||||||| |
|
|
| T |
10085 |
catgtgcttttgatgttattg |
10105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 8 - 209
Target Start/End: Original strand, 5205 - 5406
Alignment:
| Q |
8 |
ttcagtgatgacagaagtagtttggcgccattcatcatctcctcgctgacgctcctctatgactcccacttgtaatccaaacttgatcctttcttcagca |
107 |
Q |
| |
|
|||||||| ||||||| |||||||||||||| |||||||||||| || || || || |||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
5205 |
ttcagtgacgacagaaaaagtttggcgccatttatcatctcctcgttggcgatcttccatgactaccgcttgtaatccaaacttgatcctttcttcagca |
5304 |
T |
|
| Q |
108 |
ataacatcaatctttttagcaacctctttcatcctctttccaatgtcacgccgagccaaaatcttcttaggatggaaacgggtgatccacttgttgtctc |
207 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| || | |||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5305 |
ataacatcaatctttttagcaacctccttcatcctctttccaatatccctacgagccaaaatcatcttaggatggaaacgggtgatccacttgttgtctc |
5404 |
T |
|
| Q |
208 |
ca |
209 |
Q |
| |
|
|| |
|
|
| T |
5405 |
ca |
5406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 66 - 201
Target Start/End: Original strand, 13378678 - 13378813
Alignment:
| Q |
66 |
atgactcccacttgtaatccaaacttgatcctttcttcagcaataacatcaatctttttagcaacctctttcatcctctttccaatgtcacgccgagcca |
165 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||| |
|
|
| T |
13378678 |
atgactcccacatgtaatccaaacttgatccggtcttcagcaataacatcaatctttttagcaacctctttcatcctctttccaatacctcggcgagcca |
13378777 |
T |
|
| Q |
166 |
aaatcttcttaggatggaaacgggtgatccacttgt |
201 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13378778 |
aaatcttcttaggatggaaacgagtgatccacttgt |
13378813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 13386 - 13575
Alignment:
| Q |
19 |
cagaagtagtttggcgccattcatcatctcctcgctgacgctcctctatgactccca---cttgtaatccaaacttgatcctttcttcagcaataacatc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| || |||||||| ||||| | | ||||||||| ||||| |||||||||||||||||| |||| |
|
|
| T |
13386 |
cagaagtagtttggcgccattcatcatctcgtcgttggcgctcctccgtgactgcaaattgttgtaatccgaacttcatcctttcttcagcaatatcatc |
13485 |
T |
|
| Q |
116 |
aatctttttagcaacctctttcatcctctttccaatgtcacgccgagccaaaatcttcttaggatggaaacgggtgatccacttgttgtc |
205 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| || ||||||||||||||| ||||||||||||| ||||||| ||||||||| |
|
|
| T |
13486 |
gatctttttagcaacctccttcatcctctttccaatgttgcgacgagccaaaatcttcataggatggaaacgagtgatccgcttgttgtc |
13575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 66 - 204
Target Start/End: Original strand, 9088 - 9226
Alignment:
| Q |
66 |
atgactcccacttgtaatccaaacttgatcctttcttcagcaataacatcaatctttttagcaacctctttcatcctctttccaatgtcacgccgagcca |
165 |
Q |
| |
|
||||| ||||| |||||||| ||||| |||||||||||||||||| | || |||| |||||||| ||| ||||||||||||||||||| || ||| ||| |
|
|
| T |
9088 |
atgacccccacatgtaatccgaacttcatcctttcttcagcaatatcgtcgatctctttagcaatctccttcatcctctttccaatgttgcgacgaacca |
9187 |
T |
|
| Q |
166 |
aaatcttcttaggatggaaacgggtgatccacttgttgt |
204 |
Q |
| |
|
|||||||| ||||||||||||| ||||||| |||||||| |
|
|
| T |
9188 |
aaatcttcataggatggaaacgagtgatccgcttgttgt |
9226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 20 - 208
Target Start/End: Original strand, 38022 - 38213
Alignment:
| Q |
20 |
agaagtagtttggcgccattcatcatctcctcgctgacgctcctctatgactcccacttgt---aatccaaacttgatcctttcttcagcaataacatca |
116 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||| ||||||| ||||||||||| || |||||||| ||| ||||||||||||||||| ||||| |
|
|
| T |
38022 |
agaaatagtttggcgccattcatcatctcctcgttgatgctcctccgtgactcccactcgttgaaatccaaatttgttcctttcttcagcaatatcatca |
38121 |
T |
|
| Q |
117 |
atctttttagcaacctctttcatcctctttccaatgtcacgccgagccaaaatcttcttaggatggaaacgggtgatccacttgttgtctcc |
208 |
Q |
| |
|
||| ||||||||||||| ||||||||||||||||||| || | ||||||||||||| ||||||||||| ||||| ||||||| |||||| |
|
|
| T |
38122 |
atccttttagcaacctccttcatcctctttccaatgttgcgacaagccaaaatcttcacaggatggaaactagtgatgcacttgtcgtctcc |
38213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 66 - 205
Target Start/End: Original strand, 9731 - 9870
Alignment:
| Q |
66 |
atgactcccacttgtaatccaaacttgatcctttcttcagcaataacatcaatctttttagcaacctctttcatcctctttccaatgtcacgccgagcca |
165 |
Q |
| |
|
||||| ||||| |||||||| ||||| |||||||||||||||||| ||||||||| |||||||| ||| ||||||||||||||||||| || ||||||| |
|
|
| T |
9731 |
atgacccccacctgtaatccgaacttcatcctttcttcagcaatatcatcaatctctttagcaatctccttcatcctctttccaatgttgcgacgagcca |
9830 |
T |
|
| Q |
166 |
aaatcttcttaggatggaaacgggtgatccacttgttgtc |
205 |
Q |
| |
|
|||||||| ||||||||||||| ||||||| ||||||||| |
|
|
| T |
9831 |
aaatcttcataggatggaaacgagtgatccgcttgttgtc |
9870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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