View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1863_low_98 (Length: 240)
Name: NF1863_low_98
Description: NF1863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1863_low_98 |
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Alignment Details
Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 44 - 229
Target Start/End: Complemental strand, 1382225 - 1382041
Alignment:
| Q |
44 |
tacagtagatttagcaaagtagaagtattttatttagtttgatgcacaagtgacagcacttttattaaggaaatgtttctattgaatacttctaacaaat |
143 |
Q |
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| T |
1382225 |
tacagtagatttagcaaagtagaagtattttatttagtttgatgcacaagagacagcacttttattaaggaaatgtttatatttaacgcttctaacaaat |
1382126 |
T |
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| Q |
144 |
tggctatatttgatgttaaaacaagtaaattannnnnnnncccattagttttgggttttgtgaataagaagaaactattatatatt |
229 |
Q |
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| T |
1382125 |
tggctttatttgatgttaaaacaagtaaattaattttttt-tcattagttttgggttttgtgaataagaagaaactattatatatt |
1382041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 104 - 229
Target Start/End: Complemental strand, 7315685 - 7315560
Alignment:
| Q |
104 |
tttattaaggaaatgtttctattgaatacttctaacaaattggctatatttgatgttaaaacaagtaaattannnnnnnncccattagttttgggttttg |
203 |
Q |
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| T |
7315685 |
tttattaaggaaatgtttgtgttgaacgcttctaacaaattggctatatttggtgttaaaacaagtaaattaatttttttttcattagttttgggttttg |
7315586 |
T |
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| Q |
204 |
tgaataagaagaaactattatatatt |
229 |
Q |
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| T |
7315585 |
tgaataagaagaaactattatatatt |
7315560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 7316853 - 7316787
Alignment:
| Q |
17 |
aatacaaacatggatacatggcacaaatacagtagatttagcaaagtagaagtattttatttagttt |
83 |
Q |
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| T |
7316853 |
aatacaatcaaggatacatggcacaaatacagtagagttagcaaagtagaagtattttatttagttt |
7316787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 29378827 - 29378772
Alignment:
| Q |
28 |
ggatacatggcacaaatacagtagatttagcaaagtagaagtattttatttagttt |
83 |
Q |
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| T |
29378827 |
ggatacatgacacaaatacaatagatttagaaaagtagaagttttttatttagttt |
29378772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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