View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18640_high_2 (Length: 339)
Name: NF18640_high_2
Description: NF18640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18640_high_2 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 9 - 339
Target Start/End: Complemental strand, 35353633 - 35353306
Alignment:
| Q |
9 |
ggaacacagacaaaacacactacaaaaaagtgatataacacnnnnnnnnttgtggatcgacacttttacccacgtccatggaaacagtccaaccaaatat |
108 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
35353633 |
ggaacacacacaaaacacactacaaaaaagtgatataacacaaaaaaaattgtggatcgacacttttacccacgtccatggcaacagtccaaccaaatat |
35353534 |
T |
|
| Q |
109 |
tcgtcatctcaaataagattacaagttcaatagaaaattccttcnnnnnnnnnnnnnnnngttcaatagaaaatatgaaaccctctccactatgtgtacc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35353533 |
tcgtcatctcaaataagattacaagttcaatagaaaattccttcaaaaaaaaaaaaa---gttcaatagaaaatatgaaaccctctccactatgtgtacc |
35353437 |
T |
|
| Q |
209 |
accccaaaaattcgtataccctactcaagaattacaaggaataataaacacggactaacaagagacactcctaatacatgaccactcacacatgctcatt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35353436 |
accccaaaaattcgtataccctactcaagaattacaaggaataataaacacggactaacaagagacactcctaatacatgaccactcacacatgctcatt |
35353337 |
T |
|
| Q |
309 |
tctctagaatttagattatctcacacttcac |
339 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |
|
|
| T |
35353336 |
tctctagaatttagattatttcacacttcac |
35353306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 35352355 - 35352293
Alignment:
| Q |
82 |
gtccatggaaacagtccaaccaaatattcgtcatctcaaataagattacaagttcaatagaaa |
144 |
Q |
| |
|
||||||||||||| |||||| || ||||| |||||||||||||||||||| || ||||||| |
|
|
| T |
35352355 |
gtccatggaaacactccaacaaactattcaatatctcaaataagattacaagctctatagaaa |
35352293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University