View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18640_high_6 (Length: 251)
Name: NF18640_high_6
Description: NF18640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18640_high_6 |
 | |
|
| [»] scaffold1211 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 26376560 - 26376798
Alignment:
| Q |
1 |
tttacttttcttcacttgttgaggaccttgtttggcatgcactcaaagaaaaggttgaggcaagaatgatagaattgagcccgacgtccaatacatacta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26376560 |
tttacttttcttcacttgttgaggaccttgtttggcatgcactcaaagaaaaggttgaggcaagaatgatagaattgagcccgacgtccaatacatacta |
26376659 |
T |
|
| Q |
101 |
tggtacttacagattcacttttattaacagcaaactatttattgtttcatttttattgttggtctttcattgttatgatggaaaacatgaaattcaccgc |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26376660 |
tggtacttacagattcatttttattaacagcaaactatttattgtttcatttttattgctggtctttcattgttatgatggaaaacatgaaattcaccgc |
26376759 |
T |
|
| Q |
201 |
taatggtgattttctgttgttagatcatcaattgatttt |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26376760 |
taatggtgattttctgttgttagatcatcaattgatttt |
26376798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1211 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: scaffold1211
Description:
Target: scaffold1211; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 13 - 239
Target Start/End: Original strand, 539 - 765
Alignment:
| Q |
13 |
cacttgttgaggaccttgtttggcatgcactcaaagaaaaggttgaggcaagaatgatagaattgagcccgacgtccaatacatactatggtacttacag |
112 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
539 |
cacttgttgaggatcttgtttggcatgcgctcaaagaaaaggttgaggcaaggatgatagaattgagcccgacgtccaatacatactatggtacttacag |
638 |
T |
|
| Q |
113 |
attcacttttattaacagcaaactatttattgtttcatttttattgttggtctttcattgttatgatggaaaacatgaaattcaccgctaatggtgattt |
212 |
Q |
| |
|
||| | ||| || ||||||||| ||| | ||||||||||||||||||| |||||| |||| | |||||||||||| ||||||| |||||| | |||| |
|
|
| T |
639 |
atttattttcatgaacagcaaattatatcatgtttcatttttattgttgatctttctttgtaacgatggaaaacatcaaattcaaaactaatgataattt |
738 |
T |
|
| Q |
213 |
tctgttgttagatcatcaattgatttt |
239 |
Q |
| |
|
||||||||||||||||||| ||||||| |
|
|
| T |
739 |
tctgttgttagatcatcaactgatttt |
765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University