View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18640_low_1 (Length: 714)
Name: NF18640_low_1
Description: NF18640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18640_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 7 - 351
Target Start/End: Original strand, 39868295 - 39868634
Alignment:
| Q |
7 |
tccaagaatatgggaaatagctgtcaacatgtattaaaagcataggtatatannnnnnnnnnnnncaggaattcaacttgaagtcagttcagagaactaa |
106 |
Q |
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| T |
39868295 |
tccaacaatatgggaaatagctgtcaacatgtattaaaagcataggtatatatttttt-------caggaattcaacttgaagtcagttcagagaactaa |
39868387 |
T |
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| Q |
107 |
agtggtcagtggtcaattaatgaatgatatgtgtacaaagtcagagtgtttagggacacaaagtgtgagttgaaggtaaaaagcatatcttgcagatttg |
206 |
Q |
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| T |
39868388 |
agtggtcaatggtcaattaatgaattatatgtgcacaaagtcagagtgtttagggacacaaagtgtgagttgaaggtaaaa-gcatatcttgcagatttg |
39868486 |
T |
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| Q |
207 |
ctaatggaccatatggagtatatatcaattgggatatttttgttttggaagctgatatagtggacaagaaaattttattcgctagtcatgctcagaatat |
306 |
Q |
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| T |
39868487 |
ctaatggaccatttggagtatatatcaattgggatatttttgttttggaagctgatatagtggacaagaaaattttattcgctagtcatgctcagaatat |
39868586 |
T |
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| Q |
307 |
taatttttagtg---ataaataatgttgtttgaaacgaatcacagtaa |
351 |
Q |
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| T |
39868587 |
taatttttagtgataataaatattgttgtttgaaacgaatcacagtaa |
39868634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 349 - 697
Target Start/End: Original strand, 39868731 - 39869077
Alignment:
| Q |
349 |
taatttaactaagaccaatgctatttctccattgacatgttgtcccgaattactagcaaaaatcaattggccaataaaactccacaaatcaagcaaggta |
448 |
Q |
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| T |
39868731 |
taatttaactaagaccaatgctatttctccattgacatgttgtcccgaattactagcaaaaatcaattggccaataaaactccacaaattaagcaaggta |
39868830 |
T |
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| Q |
449 |
cgtggtggagcataagttagagaaaatattgagacatttcatattgtaaaactctcgggacaataaatgtcgcaagacatatagcaatatcctttaacta |
548 |
Q |
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| T |
39868831 |
cgtggtggagcataatttagagaaaatattgatacatcttatatcgtaaaactctcgggacaataaatgtcgcaagac--atagcaatatcctttaacta |
39868928 |
T |
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| Q |
549 |
attcatcaggaggaaattaaattgatgaatataatgcataaaagatcaaaggaaaaagactaattggccaacagnnnnnnnnnttaaaatattagtgagg |
648 |
Q |
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| T |
39868929 |
attcatcaggaggaaattaaatcgatgaatacaaagcatacaagaccaaaggaaaaagactaattggccaacagaaaaagaaa-aaaaaaattagtgagg |
39869027 |
T |
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| Q |
649 |
caacaatgatgttagaaactcttcacaaacatcatttc-tatgtcattac |
697 |
Q |
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| T |
39869028 |
caacaatgatgttagaaactcttcacaaacatcatttcttatgtcattac |
39869077 |
T |
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