View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18640_low_3 (Length: 306)
Name: NF18640_low_3
Description: NF18640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18640_low_3 |
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| [»] scaffold1211 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 15 - 295
Target Start/End: Original strand, 26375969 - 26376249
Alignment:
| Q |
15 |
attttctcatagtagaatgtttgtatatgtataataattttctttgtagccttgggaagaaagactgcagacagctcaagagttgggtaccctggtttta |
114 |
Q |
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| T |
26375969 |
attttctcatagtagaatgtttgtatatgtataataattttctttgtagccttgggaagaaagactacagacagctcaagagttgggtaccctggtttta |
26376068 |
T |
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| Q |
115 |
ctgagtaatctggatccatcctacacgtcgtttgaagttgaggtatctaggatccaacttttcctcccattctaatatagttttggaagtacctttgatg |
214 |
Q |
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| T |
26376069 |
ctgagtaatctggatccatcctacacgtcgtttgaagttgaggtatctaggatccaacttttcctcccattctaatatagttttggaagtacctttgatg |
26376168 |
T |
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| Q |
215 |
caatagagtttgaaaaatgttgtgtgggattgtgtcgtgtggattcataatcatgtaactgaaacgtaaatggatatgatg |
295 |
Q |
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| T |
26376169 |
caatagagtttgaaaaatgttgtgtgggattgtgtcgtgtggattcataatcgtgtaactgaaacataaatggatatgatg |
26376249 |
T |
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Target: scaffold1211 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold1211
Description:
Target: scaffold1211; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 61 - 249
Target Start/End: Original strand, 6 - 194
Alignment:
| Q |
61 |
tagccttgggaagaaagactgcagacagctcaagagttgggtaccctggttttactgagtaatctggatccatcctacacgtcgtttgaagttgaggtat |
160 |
Q |
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|||||||||||||||||||| |||| |||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
6 |
tagccttgggaagaaagactacagaaagctcaagagctgggtaccctggttttgctgagtgatctggatccatcctacacgtcgtttgaagtagaggtat |
105 |
T |
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| Q |
161 |
ctaggatccaacttttcctcccattctaatatagttttggaagtacctttgatgcaatagagtttgaaaaatgttgtgtgggattgtgt |
249 |
Q |
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| T |
106 |
ctaggatccaactttttctcccgttctaatatagtttcgaaagtacctttgatgcaatagaatatgaaaaatgttgtgtggggttgtgt |
194 |
T |
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