View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18640_low_7 (Length: 221)
Name: NF18640_low_7
Description: NF18640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18640_low_7 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 22457650 - 22457852
Alignment:
| Q |
19 |
acaacgatctcctcgaaagttttccctaaacctgaaatactttaagtggatcaaacatccaaaatctttaggcacatcatgcaatccgacatgctctaaa |
118 |
Q |
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||||||||||||||||||||| || |||||||| |||||||||| |||| |||||| ||||||||||||||| |||||| ||||||| |||||||||||| |
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| T |
22457650 |
acaacgatctcctcgaaagttctctctaaacctaaaatactttaggtgggtcaaacttccaaaatctttaggaacatcaagcaatccaacatgctctaaa |
22457749 |
T |
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| Q |
119 |
tcaagcacgttcaatcgcctgtattttgtagggattcttcttgcaagggattcatttaatgttttaacaagcagtgatcgaacctgtgagttttcaatat |
218 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22457750 |
tcaagcacgtttaatcgcctgtattttgtagggattcttcttgcaagggattcatttaatgttttaacaagcagtgatcgaacctgtgagttttcaatat |
22457849 |
T |
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| Q |
219 |
ttt |
221 |
Q |
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||| |
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| T |
22457850 |
ttt |
22457852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 22480631 - 22480833
Alignment:
| Q |
19 |
acaacgatctcctcgaaagttttccctaaacctgaaatactttaagtggatcaaacatccaaaatctttaggcacatcatgcaatccgacatgctctaaa |
118 |
Q |
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||||||||||||||||||||| || |||||||| |||||||||| |||| |||||| ||||||||||||||| |||||| ||||||| |||||||||||| |
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| T |
22480631 |
acaacgatctcctcgaaagttctctctaaacctaaaatactttaggtgggtcaaacttccaaaatctttaggaacatcaagcaatccaacatgctctaaa |
22480730 |
T |
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| Q |
119 |
tcaagcacgttcaatcgcctgtattttgtagggattcttcttgcaagggattcatttaatgttttaacaagcagtgatcgaacctgtgagttttcaatat |
218 |
Q |
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| T |
22480731 |
tcaagcacgtttaatcgcctgtattttgtagggattcttcttgcaagggattcatttaatgttttaacaagcagtgatcgaacctgtgagttttcaatat |
22480830 |
T |
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| Q |
219 |
ttt |
221 |
Q |
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||| |
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| T |
22480831 |
ttt |
22480833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 217
Target Start/End: Original strand, 22353141 - 22353174
Alignment:
| Q |
184 |
aacaagcagtgatcgaacctgtgagttttcaata |
217 |
Q |
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|||||||||||||||||| ||||||||||||||| |
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| T |
22353141 |
aacaagcagtgatcgaacatgtgagttttcaata |
22353174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 217
Target Start/End: Original strand, 22629772 - 22629805
Alignment:
| Q |
184 |
aacaagcagtgatcgaacctgtgagttttcaata |
217 |
Q |
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|||||||||||||||||| ||||||||||||||| |
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| T |
22629772 |
aacaagcagtgatcgaacatgtgagttttcaata |
22629805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 184
Target Start/End: Original strand, 29604613 - 29604751
Alignment:
| Q |
46 |
aaacctgaaatactttaagtggatcaaacatccaaaatctttaggcacatcatgcaatccgacatgctctaaatcaagcacgttcaatcgcctgtatttt |
145 |
Q |
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|||||| |||||||| |||||| |||||| | ||||||| ||| || ||| ||||||| ||||| | ||| ||||||| ||||| | ||||||| || |
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| T |
29604613 |
aaacctaaaatacttcaagtggctcaaacttggcaaatcttaaggaacttcaagcaatccaacatgattcaaagcaagcaccttcaaccacctgtatctt |
29604712 |
T |
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| Q |
146 |
gtagggattcttcttgcaagggattcatttaatgtttta |
184 |
Q |
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| T |
29604713 |
gtagggattctccttgcaaaggattcaagtaatgtttta |
29604751 |
T |
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