View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18640_low_8 (Length: 217)

Name: NF18640_low_8
Description: NF18640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18640_low_8
NF18640_low_8
[»] chr4 (16 HSPs)
chr4 (1-217)||(4011602-4011832)
chr4 (1-217)||(3811814-3812044)
chr4 (5-121)||(4003233-4003349)
chr4 (5-121)||(4026469-4026585)
chr4 (5-159)||(3953056-3953224)
chr4 (1-161)||(3821443-3821617)
chr4 (4-122)||(4220734-4220852)
chr4 (5-120)||(3916014-3916129)
chr4 (16-122)||(3927019-3927125)
chr4 (6-121)||(3988122-3988237)
chr4 (6-118)||(3825755-3825867)
chr4 (6-106)||(4019524-4019624)
chr4 (6-118)||(3962451-3962563)
chr4 (125-161)||(4220681-4220717)
chr4 (32-118)||(3805788-3805874)
chr4 (124-161)||(3927141-3927178)
[»] chr5 (1 HSPs)
chr5 (6-210)||(13398971-13399189)
[»] chr8 (4 HSPs)
chr8 (6-118)||(7086948-7087060)
chr8 (6-74)||(7035412-7035480)
chr8 (6-55)||(7069945-7069994)
chr8 (6-74)||(7028710-7028778)


Alignment Details
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 4011832 - 4011602
Alignment:
Q  1 ctcccatttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagaagaacttgcgaaaataattgattgcaaagagaaatatggaca 100  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  4011832 ctcccatttcattggtcatattctcataaaactatgcttgttcacattggtgtttagaagaacttgcgaaaataattgagtgcaaagagaaatatggaca 4011733  T
Q  101 gattgtaatacctgtttt--------------ctactgatgtacgacatcaaaagaagagttatgaaaatgcattcactgaacttgnnnnnnngtataat 186  Q
    ||||||||||||||||||              ||||  |||||||||||||||||||||||||||||||||||||  |||||||||       || ||||    
T  4011732 gattgtaatacctgttttctatggggtagatcctacaaatgtacgacatcaaaagaagagttatgaaaatgcatttgctgaacttgaaaaaaggtgtaat 4011633  T
Q  187 tcttccaaggtgcagatatggagacatgctt 217  Q
    || ||||||||||||||||||||||||||||    
T  4011632 tcgtccaaggtgcagatatggagacatgctt 4011602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 3812044 - 3811814
Alignment:
Q  1 ctcccatttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagaagaacttgcgaaaataattgattgcaaagagaaatatggaca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||| |||||||||| |||||||||    
T  3812044 ctcccatttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagatgagcttgtgaaaataattgagtgcaaagagacatatggaca 3811945  T
Q  101 gattgtaatacctgtttt--------------ctactgatgtacgacatcaaaagaagagttatgaaaatgcattcactgaacttgnnnnnnngtataat 186  Q
      ||||||||||| ||||              |||| ||||||||||||||||||||||||||||||||||||||| |||||| ||       ||||| |    
T  3811944 ttttgtaatacctattttctacggagtagatcctacagatgtacgacatcaaaagaagagttatgaaaatgcattcgctgaacatgaaaaaaggtatagt 3811845  T
Q  187 tcttccaaggtgcagatatggagacatgctt 217  Q
    || ||  ||||||||||||||| ||||||||    
T  3811844 tcgtctgaggtgcagatatggaaacatgctt 3811814  T

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Target: chr4; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 5 - 121
Target Start/End: Complemental strand, 4003349 - 4003233
Alignment:
Q  5 catttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagaagaacttgcgaaaataattgattgcaaagagaaatatggacagatt 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||    
T  4003349 catttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagaagaacttgtgaaaataattgagtgcaaagagaaatatggacggatt 4003250  T
Q  105 gtaatacctgttttcta 121  Q
    ||  |||||||||||||    
T  4003249 gttttacctgttttcta 4003233  T

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Target: chr4; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 5 - 121
Target Start/End: Complemental strand, 4026585 - 4026469
Alignment:
Q  5 catttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagaagaacttgcgaaaataattgattgcaaagagaaatatggacagatt 104  Q
    |||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  4026585 catttcattgatcatattctcagaaaactatgcttcttcaagttggtgtttagaagaacttttgaaaataattgattgcaaagagaaatatggacagatt 4026486  T
Q  105 gtaatacctgttttcta 121  Q
    |||||||||||||||||    
T  4026485 gtaatacctgttttcta 4026469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 5 - 159
Target Start/End: Original strand, 3953056 - 3953224
Alignment:
Q  5 catttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagaagaacttgcgaaaataattgattgcaaagagaaatatggacagatt 104  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||| ||||||| |||||||||||    
T  3953056 catttcattgatcatattctcagaaaactatgcttcttcacgttggtgtttagaagaacttgtgaaaataattgagtgcagagagaaaaatggacagatt 3953155  T
Q  105 gtaatacctgttttctact--------------gatgtacgacatcaaaagaagagttatgaaaatgca 159  Q
    ||||||||||||||||||               ||||||||||||||||||||||||||||||||||||    
T  3953156 gtaatacctgttttctacgaggtaggtcctacagatgtacgacatcaaaagaagagttatgaaaatgca 3953224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 3821617 - 3821443
Alignment:
Q  1 ctcccatttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagaagaacttgcgaaaataattgattgcaaagagaaatatggaca 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||| ||||||||| || ||||||||||||||||||||    
T  3821617 ctcccatttcattggtcatattctcaaaaaactatgcttcttcacattggtgtttagatgagcttgtgaaaataatcgagtgcaaagagaaatatggaca 3821518  T
Q  101 gattgtaatacctgttttctactg--------------atgtacgacatcaaaagaagagttatgaaaatgcatt 161  Q
    ||||||| ||||| |||||||| |              |||||||||||||||||||||||||||||||||||||    
T  3821517 gattgtattacctattttctacggagtaaaacccacaaatgtacgacatcaaaagaagagttatgaaaatgcatt 3821443  T

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Target: chr4; HSP #7
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 4 - 122
Target Start/End: Complemental strand, 4220852 - 4220734
Alignment:
Q  4 ccatttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagaagaacttgcgaaaataattgattgcaaagagaaatatggacagat 103  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||| |||||||||||||||  |    
T  4220852 ccatttcattggtcatattctctgaaaactatgcttcttcacattggtgtttagaagaacttgtaaaaataattgagtgcagagagaaatatggacaact 4220753  T
Q  104 tgtaatacctgttttctac 122  Q
    |||||||||| ||||||||    
T  4220752 tgtaatacctattttctac 4220734  T

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Target: chr4; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 3916014 - 3916129
Alignment:
Q  5 catttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagaagaacttgcgaaaataattgattgcaaagagaaatatggacagatt 104  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||| |||| || ||||||||||||| ||| |||    
T  3916014 catttcattgatcatattctcagaaaactatgcttgttcacattggtgtttaaaagaacttgtgaaaatagttgagtgtaaagagaaatatgcacaaatt 3916113  T
Q  105 gtaatacctgttttct 120  Q
    ||||||||||||||||    
T  3916114 gtaatacctgttttct 3916129  T

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Target: chr4; HSP #9
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 3927019 - 3927125
Alignment:
Q  16 tcatattctcagaaaactatgcttcttcacattggtgtttagaagaacttgcgaaaataattgattgcaaagagaaatatggacagattgtaatacctgt 115  Q
    ||||||| |||||||| ||||||| |||||||||||||||||||||||||| ||||||| |||| || ||||||||||||| ||| ||||||||||| ||    
T  3927019 tcatattttcagaaaaatatgcttgttcacattggtgtttagaagaacttgtgaaaatagttgagtgtaaagagaaatatgcacaaattgtaatacccgt 3927118  T
Q  116 tttctac 122  Q
    |||||||    
T  3927119 tttctac 3927125  T

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Target: chr4; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 6 - 121
Target Start/End: Complemental strand, 3988237 - 3988122
Alignment:
Q  6 atttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagaagaacttgcgaaaataattgattgcaaagagaaatatggacagattg 105  Q
    ||||||||||||||||||||| |||| ||| |||||||||||||||||||||| ||||||| ||||||||| || |||||| || |   ||||||||||     
T  3988237 atttcattggtcatattctcaaaaaattattcttcttcacattggtgtttagatgaacttgtgaaaataatcgagtgcaaaaaggatcgtggacagatta 3988138  T
Q  106 taatacctgttttcta 121  Q
    ||||||||||||||||    
T  3988137 taatacctgttttcta 3988122  T

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Target: chr4; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 6 - 118
Target Start/End: Complemental strand, 3825867 - 3825755
Alignment:
Q  6 atttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagaagaacttgcgaaaataattgattgcaaagagaaatatggacagattg 105  Q
    ||||| ||| ||||||||||| || ||||||||||||||  ||||||||||||||||| ||  | ||||  | | |||| ||||||||||||||| ||||    
T  3825867 atttccttgatcatattctcacaagactatgcttcttcatgttggtgtttagaagaacatgtcacaatacgtcaatgcagagagaaatatggacaaattg 3825768  T
Q  106 taatacctgtttt 118  Q
    | |||||||||||    
T  3825767 ttatacctgtttt 3825755  T

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Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 106
Target Start/End: Complemental strand, 4019624 - 4019524
Alignment:
Q  6 atttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagaagaacttgcgaaaataattgattgcaaagagaaatatggacagattg 105  Q
    ||||| ||| ||||||||||| || |||||||||||||||  |||||||| ||||||||||  | |||| || | |||| ||||||||||||||| ||||    
T  4019624 atttccttgatcatattctcacaagactatgcttcttcacgctggtgtttggaagaacttgtcacaatacttcaatgcagagagaaatatggacaaattg 4019525  T
Q  106 t 106  Q
    |    
T  4019524 t 4019524  T

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Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 118
Target Start/End: Original strand, 3962451 - 3962563
Alignment:
Q  6 atttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagaagaacttgcgaaaataattgattgcaaagagaaatatggacagattg 105  Q
    ||||| ||| ||||||| ||| |  ||||||||||||||  ||||||||||||||||||||  | || | || | |||| |||||||||||||||||| |    
T  3962451 atttccttgatcatattttcacacgactatgcttcttcatgttggtgtttagaagaacttgttacaacacttcaatgcagagagaaatatggacagatcg 3962550  T
Q  106 taatacctgtttt 118  Q
    | |||||| ||||    
T  3962551 ttatacctatttt 3962563  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 4220717 - 4220681
Alignment:
Q  125 atgtacgacatcaaaagaagagttatgaaaatgcatt 161  Q
    |||||||| ||||||||||||||||||||||||||||    
T  4220717 atgtacgatatcaaaagaagagttatgaaaatgcatt 4220681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 118
Target Start/End: Complemental strand, 3805874 - 3805788
Alignment:
Q  32 ctatgcttcttcacattggtgtttagaagaacttgcgaaaataattgattgcaaagagaaatatggacagattgtaatacctgtttt 118  Q
    |||||||||||||  ||||||||| || |||||||  | |||| || | |||| | ||||||||||||||||||| |||||| ||||    
T  3805874 ctatgcttcttcatgttggtgtttggacgaacttgtcacaatacttcaatgcagaaagaaatatggacagattgttatacctatttt 3805788  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 3927141 - 3927178
Alignment:
Q  124 gatgtacgacatcaaaagaagagttatgaaaatgcatt 161  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  3927141 gatgtacgacatcaaaaaaggagttatgaaaatgcatt 3927178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 6 - 210
Target Start/End: Complemental strand, 13399189 - 13398971
Alignment:
Q  6 atttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagaagaacttgcgaaaataattgattgcaaagagaaatatggacagattg 105  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||    
T  13399189 atttcattgatcatattctcagaaaactatgcttcttcacgttggtgtttagaagaacttgtgaaaataattgagtgcaaagagaaatatggacaaattg 13399090  T
Q  106 taatacctgttttct--------------actgatgtacgacatcaaaagaagagttatgaaaatgcattcactgaacttgnnnnnnngtataattcttc 191  Q
    |||||||||||||||              || ||||||||||||||||||||||||||||||||||||||   ||||||||       ||||||||| ||    
T  13399089 taatacctgttttctacggagtagatcccaccgatgtacgacatcaaaagaagagttatgaaaatgcatttgttgaacttggaaaaaggtataattcgtc 13398990  T
Q  192 caaggtgcagatatggaga 210  Q
    | |||| ||||||||||||    
T  13398989 cgaggttcagatatggaga 13398971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 118
Target Start/End: Complemental strand, 7087060 - 7086948
Alignment:
Q  6 atttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagaagaacttgcgaaaataattgattgcaaagagaaatatggacagattg 105  Q
    |||||||| |||||||||||  ||||||||||||||||| | |||||||| || || ||||  |||||  |||| || | ||||||| |||||||||||     
T  7087060 atttcattagtcatattctctcaaaactatgcttcttcaaaatggtgtttggatgagcttgtcaaaattgttgagtgtagagagaaagatggacagattt 7086961  T
Q  106 taatacctgtttt 118  Q
    || | ||||||||    
T  7086960 tattgcctgtttt 7086948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 7035412 - 7035480
Alignment:
Q  6 atttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagaagaacttgcgaaaata 74  Q
    ||||||||||||||||| |||  ||||| ||| ||||||||||||||||| || || |||| |||||||    
T  7035412 atttcattggtcatattttcaccaaactttgcatcttcacattggtgtttggatgagcttgtgaaaata 7035480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 7069994 - 7069945
Alignment:
Q  6 atttcattggtcatattctcagaaaactatgcttcttcacattggtgttt 55  Q
    |||||||| |||||||||||  |||||||||||||||||  |||||||||    
T  7069994 atttcattagtcatattctctcaaaactatgcttcttcatcttggtgttt 7069945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 7028710 - 7028778
Alignment:
Q  6 atttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagaagaacttgcgaaaata 74  Q
    ||||||||||||||||| ||   ||||| ||| ||||||||||||||||| || || |||| |||||||    
T  7028710 atttcattggtcatattttctccaaactttgcatcttcacattggtgtttggacgagcttgtgaaaata 7028778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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