View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18641_high_1 (Length: 620)
Name: NF18641_high_1
Description: NF18641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18641_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 480; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 27 - 612
Target Start/End: Complemental strand, 25331116 - 25330531
Alignment:
| Q |
27 |
aatttcattgtccactaacgaagtccaataaatagttcttttaatcattagagcttagagtttaagaattttcaataaattgagtattgattgtatcatt |
126 |
Q |
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||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
25331116 |
aatttcactgtccactaacgaagttcaataaatagttcttttaatcattagagtttagagcttaagaattttcaataaattgagttttgattgtatcatt |
25331017 |
T |
|
| Q |
127 |
tgaataattctaaatgtgttttatctaatgaaaattttannnnnnnagacacatataatagattagagtaacattgtttgactgagtattaattagtcag |
226 |
Q |
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| T |
25331016 |
tagataattctaaatgtgttttatctaatgaaaattttatttttttagacacatataatagattagagtaacattgtttgactgagtattaattagtcag |
25330917 |
T |
|
| Q |
227 |
gctggttaattaattttcaaattttagttattctaattcatctgttaagcataatatcctttgttgggtaagaaatcaacacttggcattaattatacct |
326 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25330916 |
gctggttaattaattttcaaattttagttattgtaattcatctgttaagcataatatcctttgttgggtaagaaatcaacacttggcattaattatacct |
25330817 |
T |
|
| Q |
327 |
tacgtgtaaagtaagctcttgaataaagtaaagatgctcttgctatacaaagaaatgaaatgcatataagcttgattaattgactaaaaaacactactat |
426 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25330816 |
tacgtgtaaagtaagctcttgaataaagtaaagatgctcttgctatataaagaaatgaaatgcatataagcttgattaattgactaaaaaacactattat |
25330717 |
T |
|
| Q |
427 |
ctttaaccataagcacaatcactatggctttgatcttgaagaannnnnnnctaacagaattattaactgctgcagcagtgttagtagtaatccttttctc |
526 |
Q |
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| T |
25330716 |
cttaaaccataagcacaatcactatggctttgatcttgaagaatttttctttgacagaattattaactgctgcagcagtgttagtagtaatccttttctc |
25330617 |
T |
|
| Q |
527 |
tagtgcttatagtttgaacaaagatgagttcccttctgactttgtgtttggtgtatcaacttcagcttatcaagtttgttcatctc |
612 |
Q |
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| T |
25330616 |
tagtgcttatagtttgaacaaagatgaattcccttctgactttgtgtttggtgtatcaacttcagcttaccaagtttgttcttctc |
25330531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 366 - 607
Target Start/End: Original strand, 9988304 - 9988544
Alignment:
| Q |
366 |
ttgctatacaaagaaatgaaatgcatataagcttgattaattgactaaaaaacactactatctttaaccataagcacaatcactatggctttgatcttga |
465 |
Q |
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||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||| |
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| T |
9988304 |
ttgctatacaacgaaatgaaatgcatataaggttgattaattgactaaaaaacactactagcttaaaccataagcacaatcaatatggctttgatcttga |
9988403 |
T |
|
| Q |
466 |
agaannnnnnnctaacagaattattaactgctgcagcagtgttagtagtaatcct-tttctctagtgcttatagtttgaacaaagatgagttccc-ttct |
563 |
Q |
| |
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|||| | | ||| ||||||||| ||||||||| ||| ||| |||||| |||| | ||||||||||||||||||||||||||||||| ||| |
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| T |
9988404 |
agaactttta--tgaatgaactattaactgttgcagcagtattattagcaatcctccttct-ttgtgcttatagtttgaacaaagatgagttccctttcc |
9988500 |
T |
|
| Q |
564 |
gactttgtgtttggtgtatcaacttcagcttatcaagtttgttc |
607 |
Q |
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|||||||||||| |||||||||||||||||| ||| ||||||| |
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| T |
9988501 |
aactttgtgtttgttgtatcaacttcagcttaccaattttgttc |
9988544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 482 - 607
Target Start/End: Complemental strand, 25325332 - 25325207
Alignment:
| Q |
482 |
agaattattaactgctgcagcagtgttagtagtaatccttttctctagtgcttatagtttgaacaaagatgagttcccttctgactttgtgtttggtgta |
581 |
Q |
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||||||| ||| || ||||| ||||||| |||||||||| || ||||||||||| |||||| || |||||| ||||||||| ||||||||||||||| |
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| T |
25325332 |
agaattactaaatgttgcagtagtgttactagtaatcctcctccctagtgcttatggtttgagcagagatgaattcccttcttactttgtgtttggtgct |
25325233 |
T |
|
| Q |
582 |
tcaacttcagcttatcaagtttgttc |
607 |
Q |
| |
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|||||||||||||| ||||||||||| |
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| T |
25325232 |
tcaacttcagcttaccaagtttgttc |
25325207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 128; Significance: 7e-66; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 366 - 612
Target Start/End: Original strand, 21725169 - 21725416
Alignment:
| Q |
366 |
ttgctatacaaagaaatgaaatgcatataagcttgattaattgactaaaaaacactactatctttaaccataagcacaatcactatggctttgatcttga |
465 |
Q |
| |
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||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||| |
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| T |
21725169 |
ttgctatacaacgaaatgaaatgcatataaggttgattaattgactaaaaaacactactagcttaaaccataagcacaatcagtatggctttgatcttga |
21725268 |
T |
|
| Q |
466 |
agaannnnnnnctaacagaattattaactgctgcagcagtgttagtagtaatcct-tttctctagtgcttatagtttgaacaaagatgagttccc-ttct |
563 |
Q |
| |
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|||| | | ||| ||||||||| ||||||||| ||| ||| |||||| |||| | ||||||||||||||||||||||||||||||| ||| |
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| T |
21725269 |
agaacttttctatgaatgaactattaactgttgcagcagtattattagcaatcctccttct-ttgtgcttatagtttgaacaaagatgagttccctttcc |
21725367 |
T |
|
| Q |
564 |
gactttgtgtttggtgtatcaacttcagcttatcaagtttgttcatctc |
612 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
21725368 |
gactttgtgtttggtgtatcaacttcagcttaccaagtttgttcttctc |
21725416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 366 - 612
Target Start/End: Original strand, 21804894 - 21805141
Alignment:
| Q |
366 |
ttgctatacaaagaaatgaaatgcatataagcttgattaattgactaaaaaacactactatctttaaccataagcacaatcactatggctttgatcttga |
465 |
Q |
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||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||| |
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| T |
21804894 |
ttgctatacaacgaaatgaaatgcatataaggttgattaattgactaaaaaacactactagcttaaaccataagcacaatcagtatggctttgatcttga |
21804993 |
T |
|
| Q |
466 |
agaannnnnnnctaacagaattattaactgctgcagcagtgttagtagtaatcct-tttctctagtgcttatagtttgaacaaagatgagttccc-ttct |
563 |
Q |
| |
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|||| | | ||| ||||||||| ||||||||| ||| ||| |||||| |||| | ||||||||||||||||||||||||||||||| ||| |
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| T |
21804994 |
agaacttttctatgaatgaactattaactgttgcagcagtattattagcaatcctccttct-ttgtgcttatagtttgaacaaagatgagttccctttcc |
21805092 |
T |
|
| Q |
564 |
gactttgtgtttggtgtatcaacttcagcttatcaagtttgttcatctc |
612 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
21805093 |
gactttgtgtttggtgtatcaacttcagcttaccaagtttgttcttctc |
21805141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 540 - 612
Target Start/End: Original strand, 14331440 - 14331513
Alignment:
| Q |
540 |
ttgaacaaagatgagttccctt-ctgactttgtgtttggtgtatcaacttcagcttatcaagtttgttcatctc |
612 |
Q |
| |
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|||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
14331440 |
ttgaacaaagatgagttccctttccgactttgtgtttggtgtatcaacttcagcttaccaagtttgttcttctc |
14331513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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