View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18641_low_2 (Length: 492)
Name: NF18641_low_2
Description: NF18641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18641_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 98 - 430
Target Start/End: Original strand, 14052296 - 14052629
Alignment:
| Q |
98 |
tcatattgcacaaattcttatcttttgaatgaaacnnnnnnnnntgacatcttataatcaactttgcttaaaggtataattcaaatgtgaaacaaccaac |
197 |
Q |
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| T |
14052296 |
tcatattgcacaaattcttatcttttgagtgaaacaaaaaaaaatgacatcttataatcaactttgcttaaatgtataattgaaatatgaaacaatcaac |
14052395 |
T |
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| Q |
198 |
acaaaatagcctattttctttatatatactatagatcaaatgtaatatctcttccgaccaatattcaaactttgattcaacatgttat-nnnnnnnnnnc |
296 |
Q |
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| T |
14052396 |
gcaaaatagcctattttctttatatatactatagatcaaatgtaatatctcttccgaccaatattcaaactttgattcaatatgttataaaaaaaaaaac |
14052495 |
T |
|
| Q |
297 |
tttgatttcattagaaaacccgatccttgttcggaagttggtatatgttgaacctcatcatgtgaaaacaaagagagacatggttttcctttttcaaaac |
396 |
Q |
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| T |
14052496 |
tttgatttcattagaaaacccaatccttgttcggaagttggtatatgttgaatttcatcatgtgaaaacaaagagagacatggttttcctttgtcaaaac |
14052595 |
T |
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| Q |
397 |
aataattttgtttcatagtatagtacaaaacgaa |
430 |
Q |
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| T |
14052596 |
aataattttgtttcatagtatagtacaaaacgaa |
14052629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 442 - 491
Target Start/End: Original strand, 14052615 - 14052664
Alignment:
| Q |
442 |
atagtacaaaacgaactatagagggaatttattactcacataaacaaata |
491 |
Q |
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| T |
14052615 |
atagtacaaaacgaactatagagggaatttattactcacataaacaaata |
14052664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 147 - 189
Target Start/End: Complemental strand, 24060431 - 24060389
Alignment:
| Q |
147 |
tcttataatcaactttgcttaaaggtataattcaaatgtgaaa |
189 |
Q |
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| T |
24060431 |
tcttataatcaaatttgcttaaaggtataattgaaatgagaaa |
24060389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 31268153 - 31268189
Alignment:
| Q |
208 |
ctattttctttatatatactatagatcaaatgtaata |
244 |
Q |
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| T |
31268153 |
ctattttctttatatataatatagattaaatgtaata |
31268189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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