View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18641_low_3 (Length: 448)
Name: NF18641_low_3
Description: NF18641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18641_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 3 - 434
Target Start/End: Original strand, 5032731 - 5033161
Alignment:
| Q |
3 |
attatacttaccgaataatgatgtggttttat-ttttaccagtgcatcaaattttctcatatattattactagtattaaagtttatgcatttagcatcac |
101 |
Q |
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|||||||||||||||||| ||||||||||| | |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5032731 |
attatacttaccgaataacgatgtggttttttgttttactagtgcatcaaattttctcatatatt---actagtattaaagtttatgcatttagcatcac |
5032827 |
T |
|
| Q |
102 |
agattcatactacctgctccaacctgtataattttcaaacatatggagaactgaattctttgtcagaaccacaacaaggcaggaataaatatcatgtgct |
201 |
Q |
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| T |
5032828 |
agattcatactacctgctccaacctgtataattttcaaacatatggagaactgaattctttgtcagaaccacaacaaggcaggaataaatatcatgtgct |
5032927 |
T |
|
| Q |
202 |
attggattgcttatcataacaaaataccataaagtatttagtcagcaaaatattatatcaaatagaaattagccacagttgtgacctgtgaccctctttc |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5032928 |
attggattgcttatcataacaaaataccataaagtatttagtcagcaaaatattatatcaaatagaaattagccacaggtgtgacctgtgaccctctttc |
5033027 |
T |
|
| Q |
302 |
aattatatacattgtccttaactatggtaccgctataatggttggacata-gggaaattattagacaaaaaatgggacaatgtatttattgtgtgtaggg |
400 |
Q |
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||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5033028 |
aattatatacagtgtccttaactatggtacacctataatggttggacataggggaaattattagacaaaaaatgggacaatgtatttattgtgtgtaggg |
5033127 |
T |
|
| Q |
401 |
atgtattaattaagtgcattgaaatgttaaatgt |
434 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
5033128 |
atgtattaattaagtgcattgaaatgttaaatgt |
5033161 |
T |
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