View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18641_low_6 (Length: 288)
Name: NF18641_low_6
Description: NF18641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18641_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 6459569 - 6459664
Alignment:
| Q |
18 |
ttataagggtgcatgaaagggatgacaaacttctctcttcttccacctcta---tcttgtactacaaatttagttttaccaatattttgtacactt |
110 |
Q |
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| T |
6459569 |
ttataagggtgcatgaaagggatgacaaacttctctcttcttccacctctatcttcttgtactacaactttagttttaccaatattttgtacactt |
6459664 |
T |
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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 6459653 - 6459706
Alignment:
| Q |
132 |
ttttgtacacttcagtgtcatgttttattataaaagaaaaacgccagttacaac |
185 |
Q |
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| T |
6459653 |
ttttgtacacttcagtgtcatgttttattataaaagaaaaacaccagttacaac |
6459706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 277
Target Start/End: Original strand, 6461426 - 6461477
Alignment:
| Q |
226 |
ttctttacctcaacaccctcccatgatttctaaaacttgggacaaaattctt |
277 |
Q |
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| T |
6461426 |
ttctgtacctcaacaccctcccaggatttctagaacttgggacaaaattctt |
6461477 |
T |
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