View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18641_low_9 (Length: 247)
Name: NF18641_low_9
Description: NF18641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18641_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 4 - 230
Target Start/End: Complemental strand, 26494381 - 26494164
Alignment:
| Q |
4 |
atgcgattacaattcatcatcatagccaaaaataccaagaagtttcaaacaaaagaatcacgatgagagaaaggttaagagacggttaagtaagagggag |
103 |
Q |
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| T |
26494381 |
atgcgattacaattcatcatcatagccaaaaataccaagaagtttcaaacaaaagaatcacgatgagagaaaggttaagagacggttaagtaagaggcag |
26494282 |
T |
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| Q |
104 |
caaagcttagtatatataatgagtaaatatgtttttaatcctaacagaatactcttctatcaagttttatcactacnnnnnnnnttactcgtgtttagtc |
203 |
Q |
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| T |
26494281 |
caa--------atatataatgagtaaatatgtttttaatcctaatagaatactcttctatcaagttttatcactac-aaaaaaattatccgtgtttagtc |
26494191 |
T |
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| Q |
204 |
ttcatttggtgatttcaaggactaaat |
230 |
Q |
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| T |
26494190 |
ttcatttggtgatttcaaggactaaat |
26494164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 179
Target Start/End: Complemental strand, 19081341 - 19081191
Alignment:
| Q |
13 |
caattcatcatcatagccaaaaataccaagaagtttcaaacaaaagaatcacgatgagagaaaggttaagagacggttaagtaagagggagcaaagctta |
112 |
Q |
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| T |
19081341 |
caattcatcatcatagccaaaattaccaagaagtttcaaacaaaaaaagcacgatgagagaaaggtta---------------agaggcaacaaagctta |
19081257 |
T |
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| Q |
113 |
gtatatataatgag-taaatatgtttttaatcctaacagaatactcttctatcaagttttatcactac |
179 |
Q |
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| T |
19081256 |
g--tatataatgagttaaatatgtttttaatcctaataaaatactcttctatcaagtttgatcactac |
19081191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Complemental strand, 19081171 - 19081143
Alignment:
| Q |
195 |
tgtttagtcttcatttggtgatttcaagg |
223 |
Q |
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| T |
19081171 |
tgtttagtcttcatttggtgatttcaagg |
19081143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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