View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18642_high_14 (Length: 252)
Name: NF18642_high_14
Description: NF18642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18642_high_14 |
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| [»] chr4 (3 HSPs) |
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| [»] scaffold0026 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 25816343 - 25816582
Alignment:
| Q |
18 |
caggaaacacgccgcgttactgcaacgtgaacaggtttgtataccactgcaaatcatgtggatttgacctccacccaagtagcacgaacgttggggaaat |
117 |
Q |
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| T |
25816343 |
caggaaacacgccgcgttactgcgacgtgaacgggtttgtataccactgcaaatcatgtggatttgacctccacccatgttgcgcgaacgtcggggaaat |
25816442 |
T |
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| Q |
118 |
gaaactttacctttatagaaaagtgagttcaccatgtcaccgttgtggaagaaaaggacgtagctggagttata---agagttacaatttgcatgttgct |
214 |
Q |
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| T |
25816443 |
gaaactttacctttatagaaaagtgagttcaccatgtcaccgttgtggaagaaaaggacgtagctggagttataggtcgagttacaatttgcatgttgct |
25816542 |
T |
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| Q |
215 |
tgtgt--gagggaaatgttggtggagaattggctcaattt |
252 |
Q |
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| T |
25816543 |
tgtgttatagggaaatgttggtggagaattggctcaattt |
25816582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 104 - 244
Target Start/End: Original strand, 25802379 - 25802531
Alignment:
| Q |
104 |
aacgttggggaaatgaaactttacctttatagaaaagtgagttcaccatgtcaccgttgtggaagaaaaggacgtagctggagtta------------ta |
191 |
Q |
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| T |
25802379 |
aacgatggggaaatgaaactttaccttcacaggaaagtgagttcaccatgtcaccgttgcggaagaaaaggacgtagctggagttatagatcgaactgta |
25802478 |
T |
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| Q |
192 |
agagttacaatttgcatgttgcttgtgtgagggaaatgttggtggagaattgg |
244 |
Q |
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| T |
25802479 |
agagttacaatttgcatgtggcctgtgtgagggaaatgctggtggaaaattgg |
25802531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 25802299 - 25802351
Alignment:
| Q |
42 |
acgtgaacaggtttgtataccactgcaaatcatgtggatttgacctccaccca |
94 |
Q |
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| T |
25802299 |
acgtgaacgggtttgtttaccactgcaaatcctgtgggttcgacctccaccca |
25802351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 148 - 244
Target Start/End: Complemental strand, 108813 - 108705
Alignment:
| Q |
148 |
accatgtcaccgttgtggaagaaaaggacgtagctggagttata------------agagttacaatttgcatgttgcttgtgtgagggaaatgttggtg |
235 |
Q |
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| T |
108813 |
accatgtcaccgttgtgggagaaaagcacgtagctggagttatagatcgaactgtaagagttacaatttacatgtggcttgtgtgagggaaatgctggtg |
108714 |
T |
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| Q |
236 |
gagaattgg |
244 |
Q |
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| T |
108713 |
gaaaattgg |
108705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 152
Target Start/End: Complemental strand, 112146 - 112104
Alignment:
| Q |
110 |
ggggaaatgaaactttacctttatagaaaagtgagttcaccat |
152 |
Q |
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| T |
112146 |
ggggaaatgaaactttacctttacaggaaagtgagttcaccat |
112104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 112230 - 112181
Alignment:
| Q |
44 |
gtgaacaggtttgtataccactgcaaatcatgtggatttgacctccaccc |
93 |
Q |
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| T |
112230 |
gtgaacgggtttgtttaccactgcaaatcctgtgggttcgacctccaccc |
112181 |
T |
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