View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18642_high_19 (Length: 238)
Name: NF18642_high_19
Description: NF18642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18642_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 15 - 223
Target Start/End: Complemental strand, 43376377 - 43376169
Alignment:
| Q |
15 |
cacagacaatcaaaacccacaaaccctatctcgaatccctcctccaccactccggcgcgatcctcctccgtaacttctctctccaaaccgcctcccattt |
114 |
Q |
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|||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43376377 |
cacacacaatcaaaacccacaaaccgtatttcgaatccctcctccaccactccggcgcgatcctcctccgtaacttctctctccaaaccgcctcccattt |
43376278 |
T |
|
| Q |
115 |
caactccctcgtcgaagcctttgattacgccgaactcccctacatcggcggcgctgcaccacgcaccaacgtcgtcggccgtgtcttcactgccaatgaa |
214 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43376277 |
caactccctcgtggaagcctttgattacgccgaactcccctacatcggcggcgctgcaccacgcaccaacgtcgtcggccgtgtcttcactgccaatgaa |
43376178 |
T |
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| Q |
215 |
tctccacct |
223 |
Q |
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||||||||| |
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| T |
43376177 |
tctccacct |
43376169 |
T |
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