View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18642_high_2 (Length: 498)
Name: NF18642_high_2
Description: NF18642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18642_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 111 - 482
Target Start/End: Original strand, 52166884 - 52167254
Alignment:
| Q |
111 |
actcatacaacgacacaaacatggttgaaactccggttagcaaatctgttttgaagagatcatctggtagtgtagactctattgggattggtgatttcga |
210 |
Q |
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| T |
52166884 |
actcatacagcgacacaaacatggttgaaactccggttagcaaatctgctttgaagagatcatctggtagtgtagactctattggggttggtgacgtgga |
52166983 |
T |
|
| Q |
211 |
aactggacaagcatctgttacgaagccaccaaagatggtttgtgtgaagattgaaccaaaggacaagtaatcatttgcggcaaaggaaaatgatttcaga |
310 |
Q |
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| T |
52166984 |
aactggacaagcatctgttacgaagccaccaaagatggtttgtgtgaagattaaaccaaaggacaagtaatcatttgcggcaaaggaaaatgatttcaga |
52167083 |
T |
|
| Q |
311 |
tgtctttttgtttcttggtctgatgtttgggaattgatttgctgtctacttttgcactctcctgctattaagnnnnnnnnnnnatttcctactttcaata |
410 |
Q |
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| T |
52167084 |
tgtctttttgtttcttggtctgatgtttgggaattgatttgatgtctacttttgcactctcttgctattaa-tttttttttttttttcctactttcaata |
52167182 |
T |
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| Q |
411 |
acgaatcgttcacattaacctcttattattcagaatccaataaaaaaccagtctttattgttgtgttgtttt |
482 |
Q |
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| T |
52167183 |
acaaatcgttcacattaacctcttattattctgaatgcaataaaaaaccagtatttattgttgtgttgtttt |
52167254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 52166730 - 52166792
Alignment:
| Q |
11 |
caaaggcaggagagataaaactggagaggattcggatcccaaaaagagtgatggtattttgtc |
73 |
Q |
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| T |
52166730 |
caaaggcaggagagataaaactgaagaggatccggatcccaaaaagagtgatggtattttgtc |
52166792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 183 - 284
Target Start/End: Original strand, 22506373 - 22506474
Alignment:
| Q |
183 |
tagactctattgggattggtgatttcgaaactggacaagcatctgttacgaagccaccaaagatggtttgtgtgaagattgaaccaaaggacaagtaatc |
282 |
Q |
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|||||||||||||||||||||| || || |||||||||||| ||||||| ||||| |||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
22506373 |
tagactctattgggattggtgacgtcaaatctggacaagcatttgttacgcagccaacaaagatggtgtgtgtgaagattgaacccaaggacaagtaatc |
22506472 |
T |
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| Q |
283 |
at |
284 |
Q |
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|| |
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| T |
22506473 |
at |
22506474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 41782823 - 41782863
Alignment:
| Q |
11 |
caaaggcaggagagataaaactggagaggattcggatccca |
51 |
Q |
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| T |
41782823 |
caaaggcaggagagataaaacgggagaggatccggatccca |
41782863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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