View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18642_high_8 (Length: 415)
Name: NF18642_high_8
Description: NF18642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18642_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 36152426 - 36152833
Alignment:
| Q |
1 |
tgaacaaaggcctccaactttctcttggtatcggcaaactcatgttttacccagagcaatgttcgagaaagcctgagcagcaaaataaatagacaaaaat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36152426 |
tgaacaaaggcctccaactttctcttggtattggcaaactcatgttttacccagagcaatgttcgagaaagcctgagcagcaaaataaatagacaaaaat |
36152525 |
T |
|
| Q |
101 |
tagatcggaggtatataaaattatcaagactttaccaaatatagaagatacatactaaatatgaaatatatttacatattctaatacgcatcaatccaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36152526 |
tagatcggaggtatataaaattatcaagactttaccaaatatagaagatagatactaaatatgaaatatatttacatattctaatacgcgtcaatccaat |
36152625 |
T |
|
| Q |
201 |
ttcttatttaattttttcttaaaagaaagagcaagagctcttgaccatacatgagtgtagataattattttatttgtttcctaggtcatatttagtattc |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36152626 |
ttcttatttaattttttcttaaaagaaagagcaagagctcttgaccatacatgagtgtagataattattttatttgtttcctaggtcatatttagtattc |
36152725 |
T |
|
| Q |
301 |
ttctacaaaagaagttgtaatagatatagcagaaatagaccatagagagacacaagaccaaataaaggacaattcagaaatggcacttacattcttttgt |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36152726 |
ttctacaaaagaagttgtaatagatatagcagaaatagaccatagagagacacaagaccaaataaaggacaattcagaaatggcacttacattcttttgt |
36152825 |
T |
|
| Q |
401 |
tcatctca |
408 |
Q |
| |
|
|||||||| |
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|
| T |
36152826 |
tcatctca |
36152833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 36157351 - 36157769
Alignment:
| Q |
1 |
tgaacaaaggcctccaactttctcttggtatcggcaaactcatgttttacccagagcaatgttcgagaaagcctgagcagcaaaa-taaatagacaaaaa |
99 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||| || ||||||||||||||||| |||| |||||||| |
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|
| T |
36157351 |
tgaacaaaggtctccaactttctcttggtagtagcaaactgatgttttacccagagcaatgttagatcaagcctgagcagcaaaaataaacagacaaaag |
36157450 |
T |
|
| Q |
100 |
ttagatcggaggtatataaaattatcaagactttaccaaatatagaagatacatactaa---atatgaaatatatttacatattctaatacgcatcaatc |
196 |
Q |
| |
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|||||| | |||||||||||| ||||||||| ||||||||||||||||||||||||||| |||| ||||| ||||| |||||||||||||| |||| | |
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|
| T |
36157451 |
ttagatggaaggtatataaaactatcaagacgttaccaaatatagaagatacatactaataaatataaaataaatttatatattctaatacgcgtcaacc |
36157550 |
T |
|
| Q |
197 |
caatttcttatttaattttttcttaaaagaaagagcaagagctcttgaccatacatgagtgtagataattattttatttgtttcct---aggtcatattt |
293 |
Q |
| |
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|| |||||||||| ||||||||||| |||||||||||||| ||| ||||||||||||||||||||||| || |||||||||||||| ||||| | || |
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| T |
36157551 |
cactttcttattttattttttcttacaagaaagagcaagaactcctgaccatacatgagtgtagataa-taatttatttgtttcctagaaggtcttgttc |
36157649 |
T |
|
| Q |
294 |
agtattcttctacaaaagaagttgtaatagatatagcagaaatagacc-------atagagagacacaagaccaaataaaggacaattcagaaatggcac |
386 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||||||| ||| | ||||||||| |||| ||||| | ||||||||||| ||||| |
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|
| T |
36157650 |
agtattcttctacaaaagaagttttaatag--atagcagaaataaaccacagtcaacagagagacaaaagatcaaatcatggacaattcaggccaggcac |
36157747 |
T |
|
| Q |
387 |
ttacattcttttgttcatctca |
408 |
Q |
| |
|
||||||| |||||||||||||| |
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|
| T |
36157748 |
ttacattattttgttcatctca |
36157769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 122 - 186
Target Start/End: Original strand, 26952717 - 26952781
Alignment:
| Q |
122 |
tatcaagactttaccaaatatagaagatacatactaaatatgaaatatatttacatattctaata |
186 |
Q |
| |
|
||||||||| |||| ||||||| ||||||||||||| |||| ||||||||||||||||| ||||| |
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|
| T |
26952717 |
tatcaagacgttactaaatataaaagatacatactacatataaaatatatttacatattttaata |
26952781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 123 - 187
Target Start/End: Original strand, 39261289 - 39261353
Alignment:
| Q |
123 |
atcaagactttaccaaatatagaagatacatactaaatatgaaatatatttacatattctaatac |
187 |
Q |
| |
|
|||||||| |||||||||||| || ||||||| ||||||| ||||| ||||||| |||||||||| |
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|
| T |
39261289 |
atcaagacattaccaaatataaaatatacatattaaatataaaatacatttacacattctaatac |
39261353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 41708336 - 41708272
Alignment:
| Q |
122 |
tatcaagactttaccaaatatagaagatacatactaaatatgaaatatatttacatattctaata |
186 |
Q |
| |
|
|||||||| |||| ||||||| |||||||||||||||||| || |||||| |||||||||||| |
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|
| T |
41708336 |
tatcaagatgttactaaatatataagatacatactaaatataaatgatatttgcatattctaata |
41708272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 25160253 - 25160318
Alignment:
| Q |
122 |
tatcaagactttaccaaatatagaagatacatactaaatatgaaatatatttacatattctaatac |
187 |
Q |
| |
|
|||||||| |||||||||||| ||||||||| | |||| | |||| ||||| ||||||||||||| |
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|
| T |
25160253 |
tatcaagatgttaccaaatataaaagatacatgcaaaatttaaaatgtattttcatattctaatac |
25160318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 46586866 - 46586826
Alignment:
| Q |
145 |
aagatacatactaaatatgaaatatatttacatattctaat |
185 |
Q |
| |
|
|||||||||||||||||| ||| |||||||| ||||||||| |
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|
| T |
46586866 |
aagatacatactaaatataaaagatatttacctattctaat |
46586826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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