View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18642_high_9 (Length: 341)
Name: NF18642_high_9
Description: NF18642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18642_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 18 - 331
Target Start/End: Original strand, 17392689 - 17393003
Alignment:
| Q |
18 |
cattgtgcattgttgtcttccaatgtaaaaccacacaaatgattgtgtaatggtcagtgcaagctaaataattatacaataagtcataaaaatggtcatc |
117 |
Q |
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| T |
17392689 |
cattgtgcattgttgtcttccaatgtaaaaccacacaaatgattgtgtaatggtcagtgcaagctaaataattatacaataagtcataaaaatggtcatc |
17392788 |
T |
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| Q |
118 |
atagtcattacaaacaccattttagaagttataaaagcacacttgataaaaatgttttataaataaacaagttccatcttagaagtttcaagttaacatc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17392789 |
atagtcattacaaacaccattttagaagttataaaagcacacttgataaaaatgttttataaataaacaagttccatcttagaagtttcaagttaacatc |
17392888 |
T |
|
| Q |
218 |
tgtactgtt-tattgcagtttggttcattccttcctaacaacgtgcacccttaaaattctgattgttccaccttcacgcagcacaatctcgcataagcaa |
316 |
Q |
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||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
17392889 |
agtactattgtattgcagtttggttcattccttcctaacaacgtgcacccttaaaattctgattgttccatcttcacgcagcacaatctcgcataagcaa |
17392988 |
T |
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| Q |
317 |
ctatcattttctgtg |
331 |
Q |
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||||||||||||||| |
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| T |
17392989 |
ctatcattttctgtg |
17393003 |
T |
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