View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18642_low_11 (Length: 413)

Name: NF18642_low_11
Description: NF18642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18642_low_11
NF18642_low_11
[»] chr8 (1 HSPs)
chr8 (193-396)||(38587457-38587676)
[»] chr2 (6 HSPs)
chr2 (13-107)||(13309490-13309584)
chr2 (16-108)||(10659018-10659110)
chr2 (112-193)||(10659150-10659231)
chr2 (99-194)||(13309610-13309706)
chr2 (193-268)||(4473188-4473264)
chr2 (37-108)||(23940654-23940725)
[»] chr1 (5 HSPs)
chr1 (113-193)||(9898645-9898725)
chr1 (13-80)||(9898727-9898794)
chr1 (23-108)||(12547980-12548065)
chr1 (144-194)||(12547858-12547908)
chr1 (62-108)||(12550903-12550949)
[»] chr7 (1 HSPs)
chr7 (43-108)||(36975626-36975691)
[»] chr5 (1 HSPs)
chr5 (13-108)||(26007769-26007864)


Alignment Details
Target: chr8 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 193 - 396
Target Start/End: Complemental strand, 38587676 - 38587457
Alignment:
Q  193 agggaaaaccgttctccaacatggcattcatgtcattcactcgaacaggataggatataaaaacaagttctcat----------------ggagttgctc 276  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||                ||||||||||    
T  38587676 agggagaaccgttctccaacatggcattcatgtcattcacttgaacaggatagaacataaaaacaagttctcataacatagaacaacattggagttgctc 38587577  T
Q  277 taagtaagttctcaacacaagtaattttgaattgattgaaaaccaagtaacttgacaaaaataggcctagatttaacataaaaatactaaaactttctgc 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38587576 taagtaagttctcaacacaagtaattttgaattgattgaaaaccaagtaacttgacaaaaataggcctagatttaacataaaaatactaaaactttctgc 38587477  T
Q  377 attgcttgagagctgtatat 396  Q
    ||| ||||||||||||||||    
T  38587476 attacttgagagctgtatat 38587457  T

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Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 13309490 - 13309584
Alignment:
Q  13 aatattaaagctttttaaaaactcaaggacattacagtattttcacgggggtcggggaatccgcggggtgggggatacttccccgatccccgccc 107  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  13309490 aatattaaagctttttaaaaacacaaggacattacagtattttcacgggggtcggggaatccacggggcgggggatacttccccgatccccgccc 13309584  T

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Target: chr2; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 10659018 - 10659110
Alignment:
Q  16 attaaagctttttaaaaactcaaggacattacagtattttcacgggggtcggggaatccgcggggtgggggatacttccccgatccccgcccc 108  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10659018 attaaagctttttaaaaacacaagaacattacagtattttcacgggggtcggggaatccacggggtgggggatacttccccgatccccgcccc 10659110  T

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Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 112 - 193
Target Start/End: Original strand, 10659150 - 10659231
Alignment:
Q  112 ggggaaaattccccgaaaatggggcaccgaatggggaatccccgcggggatccgctctgaaaaatctccactaacatcccta 193  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  10659150 ggggaaaattcctcgaaaatggggcaccgaatggggaatccccgcggggatccgctctgaaaaatccccactgacatcccta 10659231  T

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Target: chr2; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 99 - 194
Target Start/End: Original strand, 13309610 - 13309706
Alignment:
Q  99 tccccgcccctgcgggg-aaaattccccgaaaatggggcaccgaatggggaatccccgcggggatccgctctgaaaaatctccactaacatccctag 194  Q
    |||||||||| |||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  13309610 tccccgcccccgcgggggaaaattcctcaaaaatggggcaccgaatggggaatccccgcggggatccgctctgaaaaatccccactgacatccctag 13309706  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 193 - 268
Target Start/End: Complemental strand, 4473264 - 4473188
Alignment:
Q  193 agggaaaaccgttctccaacatggcattcatgtcatt-cactcgaacaggataggatataaaaacaagttctcatgg 268  Q
    ||||| ||||||||||||||||||||||||||||||| ||||| ||  |||||| | ||||||||||||||||||||    
T  4473264 agggagaaccgttctccaacatggcattcatgtcattccactccaatgggatagaacataaaaacaagttctcatgg 4473188  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 23940725 - 23940654
Alignment:
Q  37 aaggacattacagtattttcacgggggtcggggaatccgcggggtgggggatacttccccgatccccgcccc 108  Q
    ||||| |||||||||||||||| ||  | ||||||||||| |||  ||||||||||||||||||||||||||    
T  23940725 aaggatattacagtattttcactggtattggggaatccgcagggcaggggatacttccccgatccccgcccc 23940654  T

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Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 113 - 193
Target Start/End: Complemental strand, 9898725 - 9898645
Alignment:
Q  113 gggaaaattccccgaaaatggggcaccgaatggggaatccccgcggggatccgctctgaaaaatctccactaacatcccta 193  Q
    ||||||||||||  |||||||||||||||||||||||||| || ||||||||| ||||||||||| ||||| |||||||||    
T  9898725 gggaaaattccctaaaaatggggcaccgaatggggaatccacgtggggatccgttctgaaaaatccccactgacatcccta 9898645  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 9898794 - 9898727
Alignment:
Q  13 aatattaaagctttttaaaaactcaaggacattacagtattttcacgggggtcggggaatccgcgggg 80  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||| |||||    
T  9898794 aatattaaagctttttaaaaacacaaggacattacagtattttcacaggggttggggaatccacgggg 9898727  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 108
Target Start/End: Complemental strand, 12548065 - 12547980
Alignment:
Q  23 ctttttaaaaactcaaggacattacagtattttcacgggggtcggggaatccgcggggtgggggatacttccccgatccccgcccc 108  Q
    |||||||||||  |||||  ||||| ||||||| |  ||||||||||||||||||||| | |||||||||||| ||||||||||||    
T  12548065 ctttttaaaaatgcaagggtattactgtatttttaacggggtcggggaatccgcggggcgagggatacttccctgatccccgcccc 12547980  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 194
Target Start/End: Complemental strand, 12547908 - 12547858
Alignment:
Q  144 ggggaatccccgcggggatccgctctgaaaaatctccactaacatccctag 194  Q
    |||||||||||||||||||||||||||||||||| ||| | ||| ||||||    
T  12547908 ggggaatccccgcggggatccgctctgaaaaatccccattgacacccctag 12547858  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 12550903 - 12550949
Alignment:
Q  62 ggtcggggaatccgcggggtgggggatacttccccgatccccgcccc 108  Q
    ||||||||||||||| ||| |||||||||||||| ||||||||||||    
T  12550903 ggtcggggaatccgcagggcgggggatacttccctgatccccgcccc 12550949  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 36975626 - 36975691
Alignment:
Q  43 attacagtattttcacgggggtcggggaatccgcggggtgggggatacttccccgatccccgcccc 108  Q
    |||||||||||||||| ||  ||||||||||||||||| ||||||||| |||||||||||||||||    
T  36975626 attacagtattttcactggtatcggggaatccgcggggcgggggatacgtccccgatccccgcccc 36975691  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 26007864 - 26007769
Alignment:
Q  13 aatattaaagctttttaaaaactcaaggacattacagtattttcacgggggtcggggaatccgcggggtgggggatacttccccgatccccgcccc 108  Q
    ||||||||  ||| |||||||| |||||  |||| | |||| ||||||||||||||||||| | ||  || ||||||||||||||||||| |||||    
T  26007864 aatattaagacttcttaaaaacgcaagggtattatattattatcacgggggtcggggaatctgtggaatgagggatacttccccgatccctgcccc 26007769  T

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