View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18642_low_13 (Length: 305)
Name: NF18642_low_13
Description: NF18642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18642_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 52 - 288
Target Start/End: Original strand, 25259557 - 25259791
Alignment:
| Q |
52 |
gtgacaagaaggtaaatagagagaagttgagctagttcattaagcagaaaaataacagcatcagtgatggtacttttaacacaattgacattcaaattca |
151 |
Q |
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| T |
25259557 |
gtgacaagaaggtaaatagag--aagttgagctagtttcttaaacagaaaaataacagcatcagtgatggtactttcaacacaattgacattcaaattca |
25259654 |
T |
|
| Q |
152 |
gaccaagtttcaacatccaaggttgcatatgagcatttttgttccttctacaaaattaatacacatctccagatgtttagctgtgtacaatatgagccta |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
25259655 |
gaccaagtttcaacatccaaggttgcatatgagcatttttgttccttctacaaaattaatacacatctccagatgtttagctgtgtacaatgtgagccta |
25259754 |
T |
|
| Q |
252 |
attaataataatttgatcacatacgcatacatacttg |
288 |
Q |
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|||||||||||||| ||| ||||||||| |||||||| |
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| T |
25259755 |
attaataataatttaatcgcatacgcatgcatacttg |
25259791 |
T |
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