View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18642_low_14 (Length: 289)

Name: NF18642_low_14
Description: NF18642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18642_low_14
NF18642_low_14
[»] chr5 (2 HSPs)
chr5 (20-268)||(9198566-9198814)
chr5 (121-152)||(18873184-18873215)
[»] chr3 (16 HSPs)
chr3 (48-113)||(32034165-32034230)
chr3 (48-100)||(19984629-19984681)
chr3 (113-152)||(19984641-19984680)
chr3 (113-152)||(32034166-32034205)
chr3 (113-152)||(42637733-42637772)
chr3 (47-113)||(40926527-40926593)
chr3 (48-94)||(42637727-42637773)
chr3 (48-113)||(26926981-26927046)
chr3 (47-100)||(32516175-32516228)
chr3 (113-153)||(26927166-26927206)
chr3 (112-148)||(39268871-39268907)
chr3 (113-152)||(26926982-26927021)
chr3 (113-152)||(32516187-32516226)
chr3 (121-152)||(39269128-39269159)
chr3 (113-152)||(40926529-40926568)
chr3 (48-113)||(40926855-40926920)
[»] chr7 (9 HSPs)
chr7 (55-113)||(38948378-38948436)
chr7 (48-113)||(5266184-5266249)
chr7 (48-113)||(33834024-33834089)
chr7 (113-152)||(33834025-33834064)
chr7 (121-152)||(38948403-38948434)
chr7 (113-151)||(5266185-5266223)
chr7 (55-113)||(16564976-16565034)
chr7 (55-113)||(16600628-16600686)
chr7 (123-152)||(5266445-5266474)
[»] chr8 (5 HSPs)
chr8 (48-113)||(25186598-25186663)
chr8 (113-152)||(25186599-25186638)
chr8 (113-152)||(41456312-41456351)
chr8 (113-152)||(43901007-43901046)
chr8 (48-113)||(15968029-15968094)
[»] chr6 (4 HSPs)
chr6 (48-113)||(5592623-5592688)
chr6 (113-152)||(5592648-5592687)
chr6 (53-113)||(8929925-8929985)
chr6 (47-87)||(28985641-28985681)
[»] chr1 (9 HSPs)
chr1 (48-113)||(7171604-7171669)
chr1 (113-152)||(47086111-47086150)
chr1 (48-113)||(6238302-6238367)
chr1 (113-152)||(6237958-6237997)
chr1 (113-152)||(7171605-7171644)
chr1 (47-113)||(38871119-38871186)
chr1 (48-87)||(47086112-47086151)
chr1 (113-152)||(47377913-47377952)
chr1 (111-148)||(4112779-4112816)
[»] chr4 (6 HSPs)
chr4 (48-113)||(3640280-3640346)
chr4 (113-152)||(41743611-41743650)
chr4 (48-113)||(14115710-14115775)
chr4 (123-152)||(14945229-14945258)
chr4 (48-113)||(45684354-45684419)
chr4 (116-152)||(53684018-53684054)
[»] chr2 (3 HSPs)
chr2 (121-152)||(4722106-4722137)
chr2 (113-152)||(10485269-10485308)
chr2 (113-149)||(18607246-18607282)


Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 20 - 268
Target Start/End: Complemental strand, 9198814 - 9198566
Alignment:
Q  20 ggatagataagacttttcttccgatttagaaccggtttttaaggatgtgttagacctcaaatttcattgtggtataagagcttatcgaattcaaaccggt 119  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||| ||| |||||||||||| | | ||||||||||||||    
T  9198814 ggatagataagactcttcttccgatttagaatcggtttttaaggatgcgttagacctcaaattttattatggtataagagcctgttgaattcaaaccggt 9198715  T
Q  120 atttaaggatgagttagacctccaatttcattacgaaaaagggtaagagtggacaaaaaatagagacaaactatcattttgaacttgaaagtgtaactcg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||| |||||||||||||    
T  9198714 atttaaggatgagttagacctccaatttcattacgaaaaagggtaagagtggacaaataatagagacaaaccatcattttaaacttaaaagtgtaactcg 9198615  T
Q  220 ttatcaactttatctctgacgcaaacaaaaacgcaaagtataatctacc 268  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9198614 ttatcaactttatctctgacgcaaacaaaaacgcaaagtataatctacc 9198566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 152
Target Start/End: Complemental strand, 18873215 - 18873184
Alignment:
Q  121 tttaaggatgagttagacctccaatttcatta 152  Q
    ||||||||||||||||||||||||||||||||    
T  18873215 tttaaggatgagttagacctccaatttcatta 18873184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 48 - 113
Target Start/End: Original strand, 32034165 - 32034230
Alignment:
Q  48 gaaccggtttttaaggatgtgttagacctcaaatttcattgtggtataagagcttatcgaattcaa 113  Q
    ||||||||||||||||||| |||||||||| ||||||||| |||||| ||||||| |||| |||||    
T  32034165 gaaccggtttttaaggatgagttagacctccaatttcattatggtatcagagcttgtcgatttcaa 32034230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 19984681 - 19984629
Alignment:
Q  48 gaaccggtttttaaggatgtgttagacctcaaatttcattgtggtataagagc 100  Q
    ||||||||||||||||||| |||||||||| ||||||||| |||||| |||||    
T  19984681 gaaccggtttttaaggatgagttagacctccaatttcattatggtatcagagc 19984629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 152
Target Start/End: Complemental strand, 19984680 - 19984641
Alignment:
Q  113 aaccggtatttaaggatgagttagacctccaatttcatta 152  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  19984680 aaccggtttttaaggatgagttagacctccaatttcatta 19984641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 152
Target Start/End: Original strand, 32034166 - 32034205
Alignment:
Q  113 aaccggtatttaaggatgagttagacctccaatttcatta 152  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  32034166 aaccggtttttaaggatgagttagacctccaatttcatta 32034205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 152
Target Start/End: Complemental strand, 42637772 - 42637733
Alignment:
Q  113 aaccggtatttaaggatgagttagacctccaatttcatta 152  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  42637772 aaccggtttttaaggatgagttagacctccaatttcatta 42637733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 113
Target Start/End: Original strand, 40926527 - 40926593
Alignment:
Q  47 agaaccggtttttaaggatgtgttagacctcaaatttcattgtggtataagagcttatcgaattcaa 113  Q
    |||||||||||||||||||| ||||| |||| ||||||||| |||||| ||||| | |||| |||||    
T  40926527 agaaccggtttttaaggatgagttaggcctccaatttcattatggtattagagcctgtcgatttcaa 40926593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 42637773 - 42637727
Alignment:
Q  48 gaaccggtttttaaggatgtgttagacctcaaatttcattgtggtat 94  Q
    ||||||||||||||||||| |||||||||| ||||||||| ||||||    
T  42637773 gaaccggtttttaaggatgagttagacctccaatttcattatggtat 42637727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 113
Target Start/End: Original strand, 26926981 - 26927046
Alignment:
Q  48 gaaccggtttttaaggatgtgttagacctcaaatttcattgtggtataagagcttatcgaattcaa 113  Q
    ||||||||||||||||||| ||||| |||| ||||||||| |||||| ||||| | ||| ||||||    
T  26926981 gaaccggtttttaaggatgagttaggcctccaatttcattatggtatcagagcctgtcggattcaa 26927046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 32516228 - 32516175
Alignment:
Q  47 agaaccggtttttaaggatgtgttagacctcaaatttcattgtggtataagagc 100  Q
    |||||||||||||||||||| ||||| |||| ||||||||| |||||| |||||    
T  32516228 agaaccggtttttaaggatgagttaggcctccaatttcattatggtatcagagc 32516175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 153
Target Start/End: Original strand, 26927166 - 26927206
Alignment:
Q  113 aaccggtatttaaggatgagttagacctccaatttcattac 153  Q
    ||||||| |||||||||||||||| ||||||||||||||||    
T  26927166 aaccggtttttaaggatgagttaggcctccaatttcattac 26927206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 148
Target Start/End: Complemental strand, 39268907 - 39268871
Alignment:
Q  112 aaaccggtatttaaggatgagttagacctccaatttc 148  Q
    |||||||| ||||||||||||||||||||||||||||    
T  39268907 aaaccggtttttaaggatgagttagacctccaatttc 39268871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 152
Target Start/End: Original strand, 26926982 - 26927021
Alignment:
Q  113 aaccggtatttaaggatgagttagacctccaatttcatta 152  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  26926982 aaccggtttttaaggatgagttaggcctccaatttcatta 26927021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 152
Target Start/End: Complemental strand, 32516226 - 32516187
Alignment:
Q  113 aaccggtatttaaggatgagttagacctccaatttcatta 152  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  32516226 aaccggtttttaaggatgagttaggcctccaatttcatta 32516187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 152
Target Start/End: Original strand, 39269128 - 39269159
Alignment:
Q  121 tttaaggatgagttagacctccaatttcatta 152  Q
    ||||||||||||||||||||||||||||||||    
T  39269128 tttaaggatgagttagacctccaatttcatta 39269159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 152
Target Start/End: Original strand, 40926529 - 40926568
Alignment:
Q  113 aaccggtatttaaggatgagttagacctccaatttcatta 152  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  40926529 aaccggtttttaaggatgagttaggcctccaatttcatta 40926568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 113
Target Start/End: Original strand, 40926855 - 40926920
Alignment:
Q  48 gaaccggtttttaaggatgtgttagacctcaaatttcattgtggtataagagcttatcgaattcaa 113  Q
    ||||||||||||||||||| ||||| |||  ||||||||| |||||| ||||| | |||| |||||    
T  40926855 gaaccggtttttaaggatgagttagtccttcaatttcattatggtatcagagcctgtcgatttcaa 40926920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 38948436 - 38948378
Alignment:
Q  55 tttttaaggatgtgttagacctcaaatttcattgtggtataagagcttatcgaattcaa 113  Q
    |||||||||||| |||||||||| ||||||||| |||||| ||||||| ||||||||||    
T  38948436 tttttaaggatgagttagacctccaatttcattatggtatcagagcttgtcgaattcaa 38948378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 113
Target Start/End: Original strand, 5266184 - 5266249
Alignment:
Q  48 gaaccggtttttaaggatgtgttagacctcaaatttcattgtggtataagagcttatcgaattcaa 113  Q
    ||||||||||||||||||| ||||| |||| ||||||||| |||||| ||||| | ||||||||||    
T  5266184 gaaccggtttttaaggatgagttaggcctccaatttcattctggtatcagagcctgtcgaattcaa 5266249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 113
Target Start/End: Original strand, 33834024 - 33834089
Alignment:
Q  48 gaaccggtttttaaggatgtgttagacctcaaatttcattgtggtataagagcttatcgaattcaa 113  Q
    ||||||||||||||||||| ||||| |||| ||||||||| |||||| ||||| | |||| |||||    
T  33834024 gaaccggtttttaaggatgagttaggcctccaatttcattatggtatcagagcctgtcgatttcaa 33834089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 152
Target Start/End: Original strand, 33834025 - 33834064
Alignment:
Q  113 aaccggtatttaaggatgagttagacctccaatttcatta 152  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  33834025 aaccggtttttaaggatgagttaggcctccaatttcatta 33834064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 152
Target Start/End: Complemental strand, 38948434 - 38948403
Alignment:
Q  121 tttaaggatgagttagacctccaatttcatta 152  Q
    ||||||||||||||||||||||||||||||||    
T  38948434 tttaaggatgagttagacctccaatttcatta 38948403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 151
Target Start/End: Original strand, 5266185 - 5266223
Alignment:
Q  113 aaccggtatttaaggatgagttagacctccaatttcatt 151  Q
    ||||||| |||||||||||||||| ||||||||||||||    
T  5266185 aaccggtttttaaggatgagttaggcctccaatttcatt 5266223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 113
Target Start/End: Original strand, 16564976 - 16565034
Alignment:
Q  55 tttttaaggatgtgttagacctcaaatttcattgtggtataagagcttatcgaattcaa 113  Q
    |||||||||||| ||||| ||| ||||||||   |||||| ||||||||||||||||||    
T  16564976 tttttaaggatgagttaggccttaaatttcaacatggtatcagagcttatcgaattcaa 16565034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 16600686 - 16600628
Alignment:
Q  55 tttttaaggatgtgttagacctcaaatttcattgtggtataagagcttatcgaattcaa 113  Q
    |||||||||||| ||||| ||| ||||||||   |||||| ||||||||||||||||||    
T  16600686 tttttaaggatgagttaggccttaaatttcaacatggtatcagagcttatcgaattcaa 16600628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 152
Target Start/End: Original strand, 5266445 - 5266474
Alignment:
Q  123 taaggatgagttagacctccaatttcatta 152  Q
    ||||||||||||||||||||||||||||||    
T  5266445 taaggatgagttagacctccaatttcatta 5266474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 113
Target Start/End: Original strand, 25186598 - 25186663
Alignment:
Q  48 gaaccggtttttaaggatgtgttagacctcaaatttcattgtggtataagagcttatcgaattcaa 113  Q
    ||||||||||||||||||| ||||| |||| ||||||||| |||||| ||||| | ||||||||||    
T  25186598 gaaccggtttttaaggatgagttaggcctccaatttcattatggtatcagagcctgtcgaattcaa 25186663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 152
Target Start/End: Original strand, 25186599 - 25186638
Alignment:
Q  113 aaccggtatttaaggatgagttagacctccaatttcatta 152  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  25186599 aaccggtttttaaggatgagttaggcctccaatttcatta 25186638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 152
Target Start/End: Complemental strand, 41456351 - 41456312
Alignment:
Q  113 aaccggtatttaaggatgagttagacctccaatttcatta 152  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  41456351 aaccggtttttaaggatgagttaggcctccaatttcatta 41456312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 152
Target Start/End: Complemental strand, 43901046 - 43901007
Alignment:
Q  113 aaccggtatttaaggatgagttagacctccaatttcatta 152  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  43901046 aaccggtttttaaggatgagttaggcctccaatttcatta 43901007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 113
Target Start/End: Complemental strand, 15968094 - 15968029
Alignment:
Q  48 gaaccggtttttaaggatgtgttagacctcaaatttcattgtggtataagagcttatcgaattcaa 113  Q
    ||||||||||||||||||| ||||| || | ||||||||| |||||| ||||| | |||| |||||    
T  15968094 gaaccggtttttaaggatgagttaggccgccaatttcattatggtatcagagcctgtcgatttcaa 15968029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 113
Target Start/End: Complemental strand, 5592688 - 5592623
Alignment:
Q  48 gaaccggtttttaaggatgtgttagacctcaaatttcattgtggtataagagcttatcgaattcaa 113  Q
    ||||||||||||||||||| |||||||||| ||||||||| |||||| ||||  | ||||||||||    
T  5592688 gaaccggtttttaaggatgagttagacctccaatttcattatggtatcagagtctgtcgaattcaa 5592623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 152
Target Start/End: Complemental strand, 5592687 - 5592648
Alignment:
Q  113 aaccggtatttaaggatgagttagacctccaatttcatta 152  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  5592687 aaccggtttttaaggatgagttagacctccaatttcatta 5592648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 8929925 - 8929985
Alignment:
Q  53 ggtttttaaggatgtgttagacctcaaatttcattgtggtataagagcttatcgaattcaa 113  Q
    ||||| ||||||||  |||||||||||||||||   |||||| ||||||| ||||||||||    
T  8929925 ggtttgtaaggatgaattagacctcaaatttcaacatggtatcagagcttgtcgaattcaa 8929985  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 28985681 - 28985641
Alignment:
Q  47 agaaccggtttttaaggatgtgttagacctcaaatttcatt 87  Q
    |||||||||||||||||||| |||||||| | |||||||||    
T  28985681 agaaccggtttttaaggatgggttagacccccaatttcatt 28985641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 113
Target Start/End: Original strand, 7171604 - 7171669
Alignment:
Q  48 gaaccggtttttaaggatgtgttagacctcaaatttcattgtggtataagagcttatcgaattcaa 113  Q
    ||||||||||||||||||| ||||| |||| ||||||||| |||||| ||||| | ||||||||||    
T  7171604 gaaccggtttttaaggatgagttaggcctccaatttcattatggtatcagagcctgtcgaattcaa 7171669  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 152
Target Start/End: Complemental strand, 47086150 - 47086111
Alignment:
Q  113 aaccggtatttaaggatgagttagacctccaatttcatta 152  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  47086150 aaccggtttttaaggatgagttagacctccaatttcatta 47086111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 113
Target Start/End: Complemental strand, 6238367 - 6238302
Alignment:
Q  48 gaaccggtttttaaggatgtgttagacctcaaatttcattgtggtataagagcttatcgaattcaa 113  Q
    ||||||||||||||||||| ||||  |||| ||||||||| |||||| ||||| | ||||||||||    
T  6238367 gaaccggtttttaaggatgagttatgcctccaatttcattatggtatcagagcctgtcgaattcaa 6238302  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 152
Target Start/End: Complemental strand, 6237997 - 6237958
Alignment:
Q  113 aaccggtatttaaggatgagttagacctccaatttcatta 152  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  6237997 aaccggtttttaaggatgagttaggcctccaatttcatta 6237958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 152
Target Start/End: Original strand, 7171605 - 7171644
Alignment:
Q  113 aaccggtatttaaggatgagttagacctccaatttcatta 152  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  7171605 aaccggtttttaaggatgagttaggcctccaatttcatta 7171644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 113
Target Start/End: Complemental strand, 38871186 - 38871119
Alignment:
Q  47 agaaccggtttt-taaggatgtgttagacctcaaatttcattgtggtataagagcttatcgaattcaa 113  Q
    |||||||||||| |||||||| ||||| ||||||||||||   |||||| ||||||| ||||||||||    
T  38871186 agaaccggttttgtaaggatgcgttaggcctcaaatttcaacatggtatcagagcttgtcgaattcaa 38871119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 87
Target Start/End: Complemental strand, 47086151 - 47086112
Alignment:
Q  48 gaaccggtttttaaggatgtgttagacctcaaatttcatt 87  Q
    ||||||||||||||||||| |||||||||| |||||||||    
T  47086151 gaaccggtttttaaggatgagttagacctccaatttcatt 47086112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 152
Target Start/End: Original strand, 47377913 - 47377952
Alignment:
Q  113 aaccggtatttaaggatgagttagacctccaatttcatta 152  Q
    ||||||| ||||||||||| ||||||||||||||||||||    
T  47377913 aaccggtttttaaggatgaattagacctccaatttcatta 47377952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 148
Target Start/End: Complemental strand, 4112816 - 4112779
Alignment:
Q  111 caaaccggtatttaaggatgagttagacctccaatttc 148  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  4112816 caaaccggtttttaaggatgagttaggcctccaatttc 4112779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 113
Target Start/End: Original strand, 3640280 - 3640346
Alignment:
Q  48 gaaccggtttttaaggatgtgttagacctcaaatttcattgtggtataagag-cttatcgaattcaa 113  Q
    ||||||||||||||||||| ||||| |||| ||||||||| |||||| |||| ||| ||||||||||    
T  3640280 gaaccggtttttaaggatgagttaggcctctaatttcattatggtatcagagccttgtcgaattcaa 3640346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 152
Target Start/End: Original strand, 41743611 - 41743650
Alignment:
Q  113 aaccggtatttaaggatgagttagacctccaatttcatta 152  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  41743611 aaccggtttttaaggatgagttaggcctccaatttcatta 41743650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 113
Target Start/End: Complemental strand, 14115775 - 14115710
Alignment:
Q  48 gaaccggtttttaaggatgtgttagacctcaaatttcattgtggtataagagcttatcgaattcaa 113  Q
    ||||||||||||||||||| ||| | |||| ||||||||| |||||| ||||| | |||| |||||    
T  14115775 gaaccggtttttaaggatgagttgggcctccaatttcattatggtatcagagcctgtcgatttcaa 14115710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 152
Target Start/End: Original strand, 14945229 - 14945258
Alignment:
Q  123 taaggatgagttagacctccaatttcatta 152  Q
    ||||||||||||||||||||||||||||||    
T  14945229 taaggatgagttagacctccaatttcatta 14945258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 113
Target Start/End: Complemental strand, 45684419 - 45684354
Alignment:
Q  48 gaaccggtttttaaggatgtgttagacctcaaatttcattgtggtataagagcttatcgaattcaa 113  Q
    ||||| ||||||||||||| ||||| |||| ||||||||| |||||| ||||| | |||| |||||    
T  45684419 gaaccagtttttaaggatgagttaggcctccaatttcattatggtatcagagcgtgtcgatttcaa 45684354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 53684054 - 53684018
Alignment:
Q  116 cggtatttaaggatgagttagacctccaatttcatta 152  Q
    |||| |||||||||||||||| |||||||||||||||    
T  53684054 cggtttttaaggatgagttaggcctccaatttcatta 53684018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 152
Target Start/End: Original strand, 4722106 - 4722137
Alignment:
Q  121 tttaaggatgagttagacctccaatttcatta 152  Q
    ||||||||||||||||||||||||||||||||    
T  4722106 tttaaggatgagttagacctccaatttcatta 4722137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 152
Target Start/End: Original strand, 10485269 - 10485308
Alignment:
Q  113 aaccggtatttaaggatgagttagacctccaatttcatta 152  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  10485269 aaccggtttttaaggatgagttaggcctccaatttcatta 10485308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 149
Target Start/End: Complemental strand, 18607282 - 18607246
Alignment:
Q  113 aaccggtatttaaggatgagttagacctccaatttca 149  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  18607282 aaccggtttttaaggatgagttaggcctccaatttca 18607246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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