View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18642_low_16 (Length: 272)

Name: NF18642_low_16
Description: NF18642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18642_low_16
NF18642_low_16
[»] chr7 (1 HSPs)
chr7 (1-263)||(449923-450177)
[»] chr3 (13 HSPs)
chr3 (105-259)||(9329890-9330041)
chr3 (118-258)||(9395314-9395454)
chr3 (182-259)||(9336594-9336671)
chr3 (196-259)||(9695615-9695678)
chr3 (195-243)||(9756450-9756498)
chr3 (197-236)||(9485969-9486008)
chr3 (197-236)||(13864281-13864320)
chr3 (197-259)||(41980908-41980970)
chr3 (197-259)||(41985682-41985744)
chr3 (197-259)||(9343899-9343961)
chr3 (197-243)||(9686753-9686799)
chr3 (189-254)||(16011695-16011760)
chr3 (196-244)||(9613916-9613964)
[»] chr6 (6 HSPs)
chr6 (189-259)||(7025810-7025880)
chr6 (196-259)||(7012874-7012937)
chr6 (188-259)||(7041550-7041621)
chr6 (189-247)||(7029879-7029937)
chr6 (188-259)||(9170871-9170942)
chr6 (197-259)||(7046893-7046955)
[»] chr5 (1 HSPs)
chr5 (194-261)||(18571163-18571230)
[»] chr8 (1 HSPs)
chr8 (197-254)||(13170684-13170741)


Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 449923 - 450177
Alignment:
Q  1 tgtgcttttaaaggaaggccttgtgtggtagacagtaccaatcggactgtgatgattggaccagacatgagcattcatttgatggctcaggctgacccgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  449923 tgtgcttttaaaggaaggccttgtgtggtagacagtaccaatcagactgtgatgattggaccagacatgagcattcatttgatggctcaggctgacccgt 450022  T
Q  101 ggtatggtgggagaagaaaattcttggtggcgagtagtgagttccagttgttgctagtgatttgctatacaaacggtgaccgtgttactgtatggattga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||    
T  450023 ggtatggtgggagaagaaaattcttggtggcgagtagtgagttccagttgttgctagtgatttgctatacaaacggtg--------actgtatggattga 450114  T
Q  201 tgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaat 263  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  450115 tgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgaggaatttaggagatacaat 450177  T

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Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 105 - 259
Target Start/End: Complemental strand, 9330041 - 9329890
Alignment:
Q  105 tggtgggagaagaaaattcttggtggcgagtagtgagttccagttgttgctagtgatttgctatacaaacggtgaccgtgttactgtatggattgatgtg 204  Q
    |||||||| ||| ||||||||||| | ||||||||||||  |||||||||| |||  | | |||  |||   | | |||||| |||||||||||||||||    
T  9330041 tggtgggaaaagtaaattcttggtcgagagtagtgagtttgagttgttgctggtggatagatatgaaaa---ttatcgtgttcctgtatggattgatgtg 9329945  T
Q  205 tttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagata 259  Q
    ||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||    
T  9329944 tttaggcttgatgagaaagagaaaaggtgggtcaagttggcgaatttaggagata 9329890  T

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Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 118 - 258
Target Start/End: Complemental strand, 9395454 - 9395314
Alignment:
Q  118 aaattcttggtggcgagtagtgagttccagttgttgctagtgatttgctatacaaacggtgaccgtgttactgtatggattgatgtgtttaggcttgatg 217  Q
    ||||||||||| | || |||||| || |||||||||||||||  |   |||| ||| | ||| ||||||| |||| ||||||||||||||||||||||||    
T  9395454 aaattcttggtcgagactagtgactttcagttgttgctagtggatatatataaaaatgatgatcgtgttattgtaaggattgatgtgtttaggcttgatg 9395355  T
Q  218 agaaggagaaaaagtgggtcaagttgacgaatttaggagat 258  Q
    ||||| ||||||||||||| |||||||| ||||||||||||    
T  9395354 agaagcagaaaaagtgggtgaagttgactaatttaggagat 9395314  T

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Target: chr3; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 182 - 259
Target Start/End: Complemental strand, 9336671 - 9336594
Alignment:
Q  182 gtgttactgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagata 259  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||    
T  9336671 gtgttcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagata 9336594  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 196 - 259
Target Start/End: Original strand, 9695615 - 9695678
Alignment:
Q  196 attgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagata 259  Q
    |||||||| || |||||||||||||||||||| ||||||||||||||||| |||||||| ||||    
T  9695615 attgatgtattcaggcttgatgagaaggagaagaagtgggtcaagttgaccaatttaggggata 9695678  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 9756498 - 9756450
Alignment:
Q  195 gattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttg 243  Q
    ||||||||||| ||||||||||||||| ||||||| |||||||||||||    
T  9756498 gattgatgtgtataggcttgatgagaaagagaaaaggtgggtcaagttg 9756450  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 9485969 - 9486008
Alignment:
Q  197 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggt 236  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  9485969 ttgatgtgtttaggcttgatgagaaggagaagaagtgggt 9486008  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 13864320 - 13864281
Alignment:
Q  197 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggt 236  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  13864320 ttgatgtgtttaggcttgatgagagggagaaaaagtgggt 13864281  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 41980970 - 41980908
Alignment:
Q  197 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagata 259  Q
    |||||||||||||||||| | |||| ||||| || |||||||||||||||| |||||| ||||    
T  41980970 ttgatgtgtttaggcttgctaagaaagagaagaaatgggtcaagttgacgagtttaggggata 41980908  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 41985744 - 41985682
Alignment:
Q  197 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagata 259  Q
    |||||||||| || ||||||||||||||||| || |||||||||||| ||| |||||| ||||    
T  41985744 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggata 41985682  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 9343961 - 9343899
Alignment:
Q  197 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagata 259  Q
    |||||||||||| ||||||||||| |||||| |||||||| ||||| || | |||||| ||||    
T  9343961 ttgatgtgtttaagcttgatgagatggagaagaagtgggtgaagttaacaactttaggggata 9343899  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 243
Target Start/End: Complemental strand, 9686799 - 9686753
Alignment:
Q  197 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttg 243  Q
    ||||||| || |||||||||||||| ||||| |||||||||||||||    
T  9686799 ttgatgtattcaggcttgatgagaacgagaagaagtgggtcaagttg 9686753  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 16011695 - 16011760
Alignment:
Q  189 tgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttagg 254  Q
    |||| |||||||||||||| |||| |||||||||||||| || ||||| || ||| | ||||||||    
T  16011695 tgtaaggattgatgtgtttgggctcgatgagaaggagaagaattgggttaaattgcctaatttagg 16011760  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 9613916 - 9613964
Alignment:
Q  196 attgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttga 244  Q
    |||||| | |||| |||||||||||||||||| |||||||| |||||||    
T  9613916 attgatttttttaagcttgatgagaaggagaagaagtgggtgaagttga 9613964  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 259
Target Start/End: Complemental strand, 7025880 - 7025810
Alignment:
Q  189 tgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagata 259  Q
    |||| |||||||| |||||| |||| ||||||||||||| |||||||| |||||||||| |||||||||||    
T  7025880 tgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacgagtttaggagata 7025810  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 259
Target Start/End: Complemental strand, 7012937 - 7012874
Alignment:
Q  196 attgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagata 259  Q
    |||||| |||||| |||| ||||||||||||| |||||||| |||||||| | |||||||||||    
T  7012937 attgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagata 7012874  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 259
Target Start/End: Complemental strand, 7041621 - 7041550
Alignment:
Q  188 ctgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagata 259  Q
    |||||||||||||| ||||||  ||| ||||||||||||| |||||||| |||||||| | |||||| ||||    
T  7041621 ctgtatggattgatttgtttaaacttaatgagaaggagaagaagtgggtgaagttgactagtttaggggata 7041550  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 7029937 - 7029879
Alignment:
Q  189 tgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacga 247  Q
    |||| |||||||| |||||| |||| ||||||||||||| |||||||| ||||||||||    
T  7029937 tgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacga 7029879  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 259
Target Start/End: Complemental strand, 9170942 - 9170871
Alignment:
Q  188 ctgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagata 259  Q
    ||||| |||||||| |||||| |||| ||||||||||||| |||||||| || || |||| |||||| ||||    
T  9170942 ctgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggata 9170871  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 7046955 - 7046893
Alignment:
Q  197 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagata 259  Q
    ||||| |||||| |||| ||||||||||||| |||||||| ||||| |||| |||||| ||||    
T  7046955 ttgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttaacgagtttaggggata 7046893  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 194 - 261
Target Start/End: Complemental strand, 18571230 - 18571163
Alignment:
Q  194 ggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagataca 261  Q
    |||||||| | |||| |||||||||||||||||| |||||||| || ||||||| |||||| ||||||    
T  18571230 ggattgatttctttaagcttgatgagaaggagaagaagtgggtgaaattgacgagtttaggggataca 18571163  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 13170684 - 13170741
Alignment:
Q  197 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttagg 254  Q
    |||||||||| || |||||||| |||||||| || |||||||||||| ||| ||||||    
T  13170684 ttgatgtgttcagacttgatgaaaaggagaagaaatgggtcaagttggcgagtttagg 13170741  T

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