View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18642_low_17 (Length: 268)
Name: NF18642_low_17
Description: NF18642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18642_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 9 - 244
Target Start/End: Original strand, 44798157 - 44798392
Alignment:
| Q |
9 |
agcataggacgaaggaggatgttgcattttttgatgtacgtctgagagagaataataaagaagaagtaattatgaattatgatatttatagaagaaatta |
108 |
Q |
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| T |
44798157 |
agcagaggacgaaggaggatgttgcattttttgatgtacgtctgagagagaataataaagaagaagcaattatgaattatgatatttaaagaagaaatta |
44798256 |
T |
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| Q |
109 |
gtgataagtgtgaattggggcttagggtttgttgaatttctcaaaatccctaagcccccaattcacagcggaacacattatcatcttccattaacaaaca |
208 |
Q |
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| T |
44798257 |
gtgataagtgtgaattggggcttagggtttgttcaatttctcaaaatccctaagcccccaattcacagcggaacacattatcatcttccattaacaaaca |
44798356 |
T |
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| Q |
209 |
acattgagaatagtgaatgaaacataacgaacgaac |
244 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
44798357 |
acattgagaatagtgaatgaaacataacgaacgaac |
44798392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 35161941 - 35161717
Alignment:
| Q |
16 |
gacgaaggaggatgttgcattttttgatgtacgtctgagagagaataataaagaagaagtaattatgaattatgatatttatagaagaaattagtgataa |
115 |
Q |
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| T |
35161941 |
gacgaaggaggatgttgcattttttgacatacgtctgagagagaataataaagaa------attatgaattatgatatttatagaagaaattagtgataa |
35161848 |
T |
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| Q |
116 |
gtgtgaattggggcttagggtttgttgaatttctcaaaatccctaagcccccaattcac---agcggaacacattatcatcttccattaacaaacaacat |
212 |
Q |
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| T |
35161847 |
gtgtgaattggggcttagggtttgttcaattactcaaaatccctaagcccc-aattctctaaagtggaacacattatcatcttccattaacaaacaacat |
35161749 |
T |
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| Q |
213 |
tgagaatagtgaatgaaacataacgaacgaac |
244 |
Q |
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| T |
35161748 |
tgagaatagtgaatgaaacataacgaacgaac |
35161717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 9 - 124
Target Start/End: Original strand, 44631177 - 44631292
Alignment:
| Q |
9 |
agcataggacgaaggaggatgttgcattttttgatgtacgtctgagagagaataataaagaagaagtaattatgaattatgatatttatagaagaaatta |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
44631177 |
agcagaggacgaaggaggatgttgcattttttgatgtacgtctgagagagaataataaagaagaagcaattatgaattatgatatttaaagaagaaatta |
44631276 |
T |
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| Q |
109 |
gtgataagtgtgaatt |
124 |
Q |
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| T |
44631277 |
gtgataagtgtgaatt |
44631292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 111 - 244
Target Start/End: Complemental strand, 39840149 - 39840011
Alignment:
| Q |
111 |
gataagtgtgaattggggcttagggtttgttgaatttctcaaaatccctaagcccccaattc---acagcggaacac---attatcatcttccattaaca |
204 |
Q |
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| T |
39840149 |
gataagtgtgaattggggcttagggtttgttcaatttctcaaaatccctaag-ccacaattctctacagtggaacacattattatcatcttccattaaca |
39840051 |
T |
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| Q |
205 |
aacaacattgagaatagtgaatgaaacataacgaacgaac |
244 |
Q |
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| T |
39840050 |
aacaatattgagaatagtgaatgaaacataacgaacgaac |
39840011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 39845024 - 39844963
Alignment:
| Q |
143 |
aatttctcaaaatccctaagcccccaattc---acagcggaacacattatcatcttccattaa |
202 |
Q |
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| T |
39845024 |
aatttctcaaaatccctaagcccc-aattctctacagtggaacacattatcatcttccattaa |
39844963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 39840227 - 39840176
Alignment:
| Q |
32 |
gcattttttgatgtacgtctgagagagaataataaagaagaagtaattatga |
83 |
Q |
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| T |
39840227 |
gcattttttgacgtacgtctgagagagaataagaaagaagaaccaattatga |
39840176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 39839889 - 39839849
Alignment:
| Q |
16 |
gacgaaggaggatgttgcattttttgatgtacgtctgagag |
56 |
Q |
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| T |
39839889 |
gacgaaggatgatgttgcattttttgaagtgcgtctgagag |
39839849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 39845111 - 39845062
Alignment:
| Q |
32 |
gcattttttgatgtacgtctgagagagaataataaagaagaagtaattatga |
83 |
Q |
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|||||||||||||||||||| || ||||||| |||||||||| |||||||| |
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| T |
39845111 |
gcattttttgatgtacgtct--gaaagaataagaaagaagaagcaattatga |
39845062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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