View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18642_low_2 (Length: 508)
Name: NF18642_low_2
Description: NF18642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18642_low_2 |
 | |
|
| [»] scaffold0373 (1 HSPs) |
| | |
|
| [»] scaffold0552 (1 HSPs) |
| | |
|
| [»] scaffold0813 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 498; Significance: 0; HSPs: 16)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Complemental strand, 6794115 - 6793618
Alignment:
| Q |
1 |
tcctataaaatatgaaataatgataaggtgcactatcaattgtatgtatattaaaatttccaacgtatgcttctattttgtatgtgcatattttgtatag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6794115 |
tcctataaaatatgaaataatgataaggtgcactatcaattgtatgtatattaaaatttccaacgtatgcttctattttgtatgtgcatattttgtatag |
6794016 |
T |
|
| Q |
101 |
taatctatttccattgaatagatgttgagttaattaagtttagcatgataagaacctttattactggtactccaaagtcgatctatagtagtttaagaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6794015 |
taatctatttccattgaatagatgttgagttaattaagtttagcatgataagaacctttattactggtactccaaagtcgatctatagtagtttaagaat |
6793916 |
T |
|
| Q |
201 |
cttaagtaagtttatgacttcacatgcatgttttgatatattagttgtgttataaaagaaggtggattttaaaatggatacagatattattataccacca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6793915 |
cttaagtaagtttatgacttcacatgcatgttttgatatattagttgtgttataaaagaaggtggattttaaaatggatacagatattattataccacca |
6793816 |
T |
|
| Q |
301 |
aggcctaacaatttttagtatcgctaaaaatattctaaaagacaaaaataaacaaataacctggaatctatgagaacaaaccctgctataccaccaatat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6793815 |
aggcctaacaatttttagtatcgctaaaaatattctaaaagacaaaaataaacaaataacctggaatctatgagaacaaaccctgctataccaccaatat |
6793716 |
T |
|
| Q |
401 |
caaagagttcacttttccaattagtctttgtggattcatccacggaaattgtagatataagatcatcaaaagctttcccaaatggaccttcctgatga |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6793715 |
caaagagttcacttttccaattagtctttgtggattcatccacggaaattgtagatataagatcatcaaaagctttcccaaatggaccttcctgatga |
6793618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 255 - 497
Target Start/End: Original strand, 6591817 - 6592061
Alignment:
| Q |
255 |
aaagaaggtggattttaaaatggatacagatattattataccaccaaggcctaacaatttttagtatcgcta--aaaatattctaaaagacaaaaataaa |
352 |
Q |
| |
|
||||||||| ||||||| ||||| ||| ||||||||| ||||||||||||||| || |||||| ||| ||| |||||| ||||||||||||||||||| |
|
|
| T |
6591817 |
aaagaaggtaaattttaagatggacacaaatattattacaccaccaaggcctaagaacttttagcatcactaccaaaatactctaaaagacaaaaataaa |
6591916 |
T |
|
| Q |
353 |
caaataacctggaatctatgagaacaaaccctgctataccaccaatatcaaagagttcacttttccaattagtctttgtggattcatccacggaaattgt |
452 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||| || ||| || | |
|
|
| T |
6591917 |
taaataacctggaatctatgaggacaaaccctgctattccaccaatatcaaagagttctcttttccaattactctttgtggattcatctactgaattttt |
6592016 |
T |
|
| Q |
453 |
agatataagatcatcaaaagctttcccaaatggaccttcctgatg |
497 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
6592017 |
tgatataagatcatcaaaagatttcccaaactgaccttcctgatg |
6592061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 219 - 482
Target Start/End: Complemental strand, 6750400 - 6750138
Alignment:
| Q |
219 |
ttcacatgcatgttttgatatattagttgtgttataaaagaaggtggattttaaaatggatacagatattattataccaccaaggcctaacaatttttag |
318 |
Q |
| |
|
|||||||||||||| || |||||||||||| ||| ||||||||||| |||||||| || ||||| |||| |||| |||| |||||||||| || || ||| |
|
|
| T |
6750400 |
ttcacatgcatgttctgctatattagttgtattacaaaagaaggtgaattttaaactgaatacaaatatcattacaccatcaaggcctaagaaattatag |
6750301 |
T |
|
| Q |
319 |
tatcgctaaaaatattctaaaagacaaaaataaacaaataacctggaatctatgagaacaaaccctgctataccaccaatatcaaagagttcacttttcc |
418 |
Q |
| |
|
|||| | || |||||||||||||| ||||| ||| ||| ||||||||||||||||| |||||||| ||| | ||||||||||||| ||| || ||| ||| |
|
|
| T |
6750300 |
tatcaccaacaatattctaaaagaaaaaaaaaaaaaaa-aacctggaatctatgaggacaaacccagctgtgccaccaatatcaatgaggtctcttctcc |
6750202 |
T |
|
| Q |
419 |
aattagtctttgtggattcatccacggaaattgtagatataagatcatcaaaagctttcccaaa |
482 |
Q |
| |
|
||||| ||||||| ||||||||||| || ||| | ||||||||||| |||||| |||||||||| |
|
|
| T |
6750201 |
aattactctttgttgattcatccactgagatttttgatataagatcgtcaaaacctttcccaaa |
6750138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 348 - 482
Target Start/End: Original strand, 6536750 - 6536884
Alignment:
| Q |
348 |
ataaacaaataacctggaatctatgagaacaaaccctgctataccaccaatatcaaagagttcacttttccaattagtctttgtggattcatccacggaa |
447 |
Q |
| |
|
||||| |||||||||||||||| |||| |||||||||||||| ||||||||||||| ||| || ||| |||||||| ||||||||||||||||||| || |
|
|
| T |
6536750 |
ataaataaataacctggaatctttgagtacaaaccctgctatgccaccaatatcaatgaggtctcttctccaattactctttgtggattcatccaccgag |
6536849 |
T |
|
| Q |
448 |
attgtagatataagatcatcaaaagctttcccaaa |
482 |
Q |
| |
|
||||| ||||||||||| ||||| ||||| ||||| |
|
|
| T |
6536850 |
attgttgatataagatcttcaaaggcttttccaaa |
6536884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 354 - 498
Target Start/End: Complemental strand, 6648466 - 6648322
Alignment:
| Q |
354 |
aaataacctggaatctatgagaacaaaccctgctataccaccaatatcaaagagttcacttttccaattagtctttgtggattcatccacggaaattgta |
453 |
Q |
| |
|
|||| ||||||||||| |||| ||||| |||||||| || |||||||||| ||| || |||||||||||| ||||||||||||||||||| || ||||| |
|
|
| T |
6648466 |
aaatgacctggaatctttgagtacaaagcctgctatgccgccaatatcaatgaggtctcttttccaattactctttgtggattcatccactgagattgtt |
6648367 |
T |
|
| Q |
454 |
gatataagatcatcaaaagctttcccaaatggaccttcctgatga |
498 |
Q |
| |
|
|| |||||||| ||||||| ||| ||||| |||||||||||||| |
|
|
| T |
6648366 |
gagataagatcttcaaaagattttccaaactgaccttcctgatga |
6648322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 354 - 492
Target Start/End: Original strand, 6625549 - 6625687
Alignment:
| Q |
354 |
aaataacctggaatctatgagaacaaaccctgctataccaccaatatcaaagagttcacttttccaattagtctttgtggattcatccacggaaattgta |
453 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||| | ||||||||| |||||| | |||||||||||| ||||||||||||||||||| || ||||| |
|
|
| T |
6625549 |
aaataacctggaatctatgagtacaaaacctgctatgctaccaatatcgaagagtgctcttttccaattactctttgtggattcatccactgagattgtt |
6625648 |
T |
|
| Q |
454 |
gatataagatcatcaaaagctttcccaaatggaccttcc |
492 |
Q |
| |
|
| |||||| | ||||||||||| ||||| |||||||| |
|
|
| T |
6625649 |
ggtataagtttttcaaaagcttttccaaactgaccttcc |
6625687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 267 - 482
Target Start/End: Original strand, 6548995 - 6549209
Alignment:
| Q |
267 |
ttttaaaatggatacagatattattataccaccaaggcctaacaattttta-gtatcgctaaaaatattctaaaagacaaaaataaacaaataacctgga |
365 |
Q |
| |
|
|||||||||||| ||||||| ||||| ||||||||||||||| |||||| | | ||| | || |||| | |||| || || || || ||||||||| || |
|
|
| T |
6548995 |
ttttaaaatggacacagataatattacaccaccaaggcctaagaattttaaagaatcaccaacaatactgtaaaggaaaataa--aataaataaccttga |
6549092 |
T |
|
| Q |
366 |
atctatgagaacaaaccctgctataccaccaatatcaaagagttcacttttccaattagtctttgtggattcatccacggaaattgtagatataagatca |
465 |
Q |
| |
|
|| |||||| |||||||||| ||| |||| |||||||||||| || ||| |||||||| ||||||| |||||||| || || || | |||||||||||| |
|
|
| T |
6549093 |
atttatgaggacaaaccctgatatgccacaaatatcaaagagctctcttctccaattactctttgttgattcatcaactgaggtttttgatataagatca |
6549192 |
T |
|
| Q |
466 |
tcaaaagctttcccaaa |
482 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
6549193 |
tcaaaacctttcccaaa |
6549209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 345 - 498
Target Start/End: Complemental strand, 6813142 - 6812992
Alignment:
| Q |
345 |
aaaataaacaaataacctggaatctatgagaacaaaccctgctataccaccaatatcaaagagttcacttttccaattagtctttgtggattcatccacg |
444 |
Q |
| |
|
|||||||| |||||| |||||||||| ||| |||||||||||||| |||||||||| |||||| |||||||||||| |||||||||||||||| | |
|
|
| T |
6813142 |
aaaataaataaataaactggaatctaggagtacaaaccctgctatgccaccaatatt---gagttctcttttccaattactctttgtggattcatctatt |
6813046 |
T |
|
| Q |
445 |
gaaattgtagatataagatcatcaaaagctttcccaaatggaccttcctgatga |
498 |
Q |
| |
|
|| ||||| || |||||||| || |||||||| |||||| ||||||| |||||| |
|
|
| T |
6813045 |
gagattgttgacataagatcttccaaagcttttccaaattgaccttcttgatga |
6812992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 346 - 482
Target Start/End: Complemental strand, 6770845 - 6770709
Alignment:
| Q |
346 |
aaataaacaaataacctggaatctatgagaacaaaccctgctataccaccaatatcaaagagttcacttttccaattagtctttgtggattcatccacgg |
445 |
Q |
| |
|
||||||| | ||||||||||||||||||| ||| |||| ||| |||| |||||| |||| ||| ||| |||| ||| ||||||||||||||||||| | |
|
|
| T |
6770845 |
aaataaatacataacctggaatctatgagggtaaaacctgatatgccacaaatatcgaagatttcccttctccagttactctttgtggattcatccactg |
6770746 |
T |
|
| Q |
446 |
aaattgtagatataagatcatcaaaagctttcccaaa |
482 |
Q |
| |
|
| ||| | |||||||||||||||||| |||||||||| |
|
|
| T |
6770745 |
agatttttgatataagatcatcaaaacctttcccaaa |
6770709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 354 - 497
Target Start/End: Complemental strand, 6716823 - 6716680
Alignment:
| Q |
354 |
aaataacctggaatctatgagaacaaaccctgctataccaccaatatcaaagagttcacttttccaattagtctttgtggattcatccacggaaattgta |
453 |
Q |
| |
|
|||| |||||||| ||| || |||||||| ||||| ||||||||||||||||||| ||| |||||||| | | ||||||||||||||| || || || |
|
|
| T |
6716823 |
aaattacctggaacctactagtacaaacccagctatgccaccaatatcaaagagttgtcttctccaattactatatgtggattcatccactgagatagtt |
6716724 |
T |
|
| Q |
454 |
gatataagatcatcaaaagctttcccaaatggaccttcctgatg |
497 |
Q |
| |
|
|||| ||| || ||||||||||| ||||| |||||| |||||| |
|
|
| T |
6716723 |
gataaaagttcttcaaaagcttttccaaaccgacctttctgatg |
6716680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 97 - 248
Target Start/End: Original strand, 6590502 - 6590659
Alignment:
| Q |
97 |
atagtaatctatttccattgaatagatgttgagttaattaagtttagcatgata-----agaacctttattactggtactccaaa-gtcgatctatagta |
190 |
Q |
| |
|
|||||||||| || |||| | |||| |||||||||| ||||||||||||||| | || ||||||| ||||||||||||| ||| |||| |||| |
|
|
| T |
6590502 |
atagtaatctgttatcatttattagaagttgagttaaataagtttagcatgatttagtgaaaatctttattgctggtactccaaaagtcactctacagta |
6590601 |
T |
|
| Q |
191 |
gtttaagaatcttaagtaagtttatgacttcacatgcatgttttgatatattagttgt |
248 |
Q |
| |
|
|||||||||||| ||||||| ||||| || ||||| ||||| ||||||||||||||| |
|
|
| T |
6590602 |
gtttaagaatctctagtaagtctatgaatttacatggatgttctgatatattagttgt |
6590659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 357 - 442
Target Start/End: Complemental strand, 6833710 - 6833625
Alignment:
| Q |
357 |
taacctggaatctatgagaacaaaccctgctataccaccaatatcaaagagttcacttttccaattagtctttgtggattcatcca |
442 |
Q |
| |
|
|||||||||| ||| ||| |||||||| ||||| ||||||||||||||||| || ||| |||||||| ||||| |||||||||||| |
|
|
| T |
6833710 |
taacctggaacctaagagtacaaacccagctatgccaccaatatcaaagagatctcttctccaattactctttttggattcatcca |
6833625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 346 - 498
Target Start/End: Complemental strand, 6713067 - 6712915
Alignment:
| Q |
346 |
aaataaacaaataacctggaatctatgagaacaaaccctgctataccaccaatatcaaagagttcacttttccaattagtctttgtggattcatccacgg |
445 |
Q |
| |
|
||||||| |||||||||||||||| ||| | |||||| || | ||||||||||||| ||| || ||| |||||||| ||||||||||||||||||| | |
|
|
| T |
6713067 |
aaataaataaataacctggaatctgtgactataaacccatctttgccaccaatatcaatgaggtctcttctccaattactctttgtggattcatccactg |
6712968 |
T |
|
| Q |
446 |
aaattgtagatataagatcatcaaaagctttcccaaatggaccttcctgatga |
498 |
Q |
| |
|
| ||| | |||||||| || |||||||| ||||| ||||||| |||||| |
|
|
| T |
6712967 |
agatttctaagataagatcttccaaagcttttccaaactgaccttcttgatga |
6712915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 353 - 482
Target Start/End: Original strand, 6501042 - 6501171
Alignment:
| Q |
353 |
caaataacctggaatctatgagaacaaaccctgctataccaccaatatcaaagagttcacttttccaattagtctttgtggattcatccacggaaattgt |
452 |
Q |
| |
|
|||||||||||||||| ||||| |||| |||||||| || ||||||||| ||| || ||| |||||| | |||| || || |||||||| || ||||| |
|
|
| T |
6501042 |
caaataacctggaatcaatgagtacaatgcctgctatgcccccaatatcactgaggtctcttctccaatcactcttggtagactcatccactgagattgt |
6501141 |
T |
|
| Q |
453 |
agatataagatcatcaaaagctttcccaaa |
482 |
Q |
| |
|
|||||||| || ||||||||||| ||||| |
|
|
| T |
6501142 |
tgatataagttcttcaaaagcttttccaaa |
6501171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 6590333 - 6590378
Alignment:
| Q |
1 |
tcctataaaatatgaaataatgataaggtgcactatcaattgtatg |
46 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||| |||||||||||| |
|
|
| T |
6590333 |
tcctataaaatatgaaacaatgaaaaggtgcacaatcaattgtatg |
6590378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 6833848 - 6833798
Alignment:
| Q |
1 |
tcctataaaatatgaaataatgataaggtgcactatcaattgtatgtatat |
51 |
Q |
| |
|
|||||||||||| |||| ||| |||||||||| ||||||||||||||||| |
|
|
| T |
6833848 |
tcctataaaataagaaacaataataaggtgcataatcaattgtatgtatat |
6833798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0373 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: scaffold0373
Description:
Target: scaffold0373; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Original strand, 12189 - 12686
Alignment:
| Q |
1 |
tcctataaaatatgaaataatgataaggtgcactatcaattgtatgtatattaaaatttccaacgtatgcttctattttgtatgtgcatattttgtatag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12189 |
tcctataaaatatgaaataatgataaggtgcactatcaattgtatgtatattaaaatttccaacgtatgcttctattttgtatgtgcatattttgtatag |
12288 |
T |
|
| Q |
101 |
taatctatttccattgaatagatgttgagttaattaagtttagcatgataagaacctttattactggtactccaaagtcgatctatagtagtttaagaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12289 |
taatctatttccattgaatagatgttgagttaattaagtttagcatgataagaacctttattactggtactccaaagtcgatctatagtagtttaagaat |
12388 |
T |
|
| Q |
201 |
cttaagtaagtttatgacttcacatgcatgttttgatatattagttgtgttataaaagaaggtggattttaaaatggatacagatattattataccacca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12389 |
cttaagtaagtttatgacttcacatgcatgttttgatatattagttgtgttataaaagaaggtggattttaaaatggatacagatattattataccacca |
12488 |
T |
|
| Q |
301 |
aggcctaacaatttttagtatcgctaaaaatattctaaaagacaaaaataaacaaataacctggaatctatgagaacaaaccctgctataccaccaatat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12489 |
aggcctaacaatttttagtatcgctaaaaatattctaaaagacaaaaataaacaaataacctggaatctatgagaacaaaccctgctataccaccaatat |
12588 |
T |
|
| Q |
401 |
caaagagttcacttttccaattagtctttgtggattcatccacggaaattgtagatataagatcatcaaaagctttcccaaatggaccttcctgatga |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12589 |
caaagagttcacttttccaattagtctttggggattcatccacggaaattgtagatataagatcatcaaaagctttcccaaatggaccttcctgatga |
12686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0552 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: scaffold0552
Description:
Target: scaffold0552; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 345 - 498
Target Start/End: Complemental strand, 614 - 464
Alignment:
| Q |
345 |
aaaataaacaaataacctggaatctatgagaacaaaccctgctataccaccaatatcaaagagttcacttttccaattagtctttgtggattcatccacg |
444 |
Q |
| |
|
|||||||| |||||| |||||||||| ||| |||||||||||||| |||||||||| |||||| |||||||||||| |||||||||||||||| | |
|
|
| T |
614 |
aaaataaataaataaactggaatctaggagtacaaaccctgctatgccaccaatatt---gagttctcttttccaattactctttgtggattcatctatt |
518 |
T |
|
| Q |
445 |
gaaattgtagatataagatcatcaaaagctttcccaaatggaccttcctgatga |
498 |
Q |
| |
|
|| ||||| || |||||||| || |||||||| |||||| ||||||| |||||| |
|
|
| T |
517 |
gagattgttgacataagatcttccaaagcttttccaaattgaccttcttgatga |
464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0813 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0813
Description:
Target: scaffold0813; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 354 - 497
Target Start/End: Original strand, 1853 - 1996
Alignment:
| Q |
354 |
aaataacctggaatctatgagaacaaaccctgctataccaccaatatcaaagagttcacttttccaattagtctttgtggattcatccacggaaattgta |
453 |
Q |
| |
|
|||| |||||||| ||| || |||||||| ||||| ||||||||||||||||||| ||| |||||||| | | ||||||||||||||| || || || |
|
|
| T |
1853 |
aaattacctggaacctactagtacaaacccagctatgccaccaatatcaaagagttgtcttctccaattactatatgtggattcatccactgagatagtt |
1952 |
T |
|
| Q |
454 |
gatataagatcatcaaaagctttcccaaatggaccttcctgatg |
497 |
Q |
| |
|
|||| ||| || ||||||||||| ||||| |||||| |||||| |
|
|
| T |
1953 |
gataaaagttcttcaaaagcttttccaaaccgacctttctgatg |
1996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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