View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18642_low_21 (Length: 245)
Name: NF18642_low_21
Description: NF18642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18642_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 154; Significance: 8e-82; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 36476615 - 36476814
Alignment:
| Q |
15 |
ataattctccaaccaaatttcatcccctggatgcaccacaaagatcatcagttcaaaatccacatgctcatatataaccctaaaagatctcaatactatt |
114 |
Q |
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| T |
36476615 |
ataattctccaaccaaatttcatcccctagatgcaccacaaagatcatcagttcaaaatccacatgctcatatataaccctaaaagatctcaatactatt |
36476714 |
T |
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| Q |
115 |
actcnnnnnnnnnnnnnnaacaaattgtatatataaagtatttgtgaatattgaaaacacttaccggccaagtgtgtttataaaatactttagcatgaat |
214 |
Q |
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| T |
36476715 |
act--------tttttttaacaaattgtatatataaagtatttgtgaatattgaaaacacttaccggccaagtgtgtttataaaatactttagcatgaat |
36476806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 36467121 - 36467177
Alignment:
| Q |
156 |
ttgtgaatattgaaaacacttaccggccaagtgtgtttataaaatactttagcatga |
212 |
Q |
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| T |
36467121 |
ttgtgaatattgaacactcttaccggccaagtgtgtttataaaaaactttagcatga |
36467177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 36466324 - 36466365
Alignment:
| Q |
18 |
attctccaaccaaatttcatcccctggatgcaccacaaagat |
59 |
Q |
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| T |
36466324 |
attctccaaccaaatttcatcccctacatgcaccacaaagat |
36466365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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