View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18642_low_24 (Length: 237)
Name: NF18642_low_24
Description: NF18642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18642_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 28733088 - 28733289
Alignment:
| Q |
18 |
aggcattggaaacacttggtacaactcaaatgcaattggaagctgcaaataagacagtggaaacgctccgattagaaggtgcaaaagcgtcagaagatta |
117 |
Q |
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| T |
28733088 |
aggcattggaaacagttggtacaactcaaatgcaattggaagctgcaaataagacagtggaaacgctccgattagaaggtgcaaaagcgtcagaagatta |
28733187 |
T |
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| Q |
118 |
ccaatccttagctttagagttagagaaatcaaggtctcaagtaagctcactggaggaacttgtgagcaaacttcaggatgatttggtcagtggagtcggt |
217 |
Q |
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| T |
28733188 |
ccaatccttagctttagagttagagaaatcaaggtctcaagtaagctcactggaggaacttgtgagcaaacttcaggatgatttggtcagtggagtcggt |
28733287 |
T |
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| Q |
218 |
tt |
219 |
Q |
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| T |
28733288 |
tt |
28733289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 44 - 190
Target Start/End: Original strand, 22109981 - 22110127
Alignment:
| Q |
44 |
caaatgcaattggaagctgcaaataagacagtggaaacgctccgattagaaggtgcaaaagcgtcagaagattaccaatccttagctttagagttagaga |
143 |
Q |
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| T |
22109981 |
caaatgcaattggaaacggtaaataagacagtggaaacactccgatcagatggtctaaaagcaactgaagcttacaagtccttagctttggagttggagc |
22110080 |
T |
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| Q |
144 |
aatcaaggtctcaagtaagctcactggaggaacttgtgagcaaactt |
190 |
Q |
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| T |
22110081 |
aatcaagatctcaagcaaagtccttggaggaacttgtgaggaaactt |
22110127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 44 - 190
Target Start/End: Complemental strand, 40584608 - 40584462
Alignment:
| Q |
44 |
caaatgcaattggaagctgcaaataagacagtggaaacgctccgattagaaggtgcaaaagcgtcagaagattaccaatccttagctttagagttagaga |
143 |
Q |
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| T |
40584608 |
caaatgcaattggaaacggtaaataagacagtggaaacactccgatcagatggtctaaaagcaactgaagcttacaagtccttagctttggagttggagc |
40584509 |
T |
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| Q |
144 |
aatcaaggtctcaagtaagctcactggaggaacttgtgagcaaactt |
190 |
Q |
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| T |
40584508 |
aatcaagatctcaagcaaagtccttggaggaacttgtgaggaaactt |
40584462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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