View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18642_low_25 (Length: 236)
Name: NF18642_low_25
Description: NF18642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18642_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 15 - 218
Target Start/End: Original strand, 54848892 - 54849094
Alignment:
| Q |
15 |
aaaatggcataatgtggtcaaaagttatttcaaattccctgttagggttgatcttgtggttgcagatcaggttcatgttcccccaactctaaaaaatgag |
114 |
Q |
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| T |
54848892 |
aaaatggcataatgtggtcaaaagttatttcaaattccctgttagggttgatcttgtggttgcagatcaggttcatgttcccccaactctaaaaaatgag |
54848991 |
T |
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| Q |
115 |
atcaaacttaacaatatccaaatcatataactccattccttgttatctcccaatttaactatattatatagaggaactccatttcatattatctcccaat |
214 |
Q |
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| T |
54848992 |
atcaaacttaacaatatcc-aatcatataactccattccttgttatctcccaatttaactatattatatagaggaactccatttcatattatctcccaat |
54849090 |
T |
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| Q |
215 |
ttaa |
218 |
Q |
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|||| |
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| T |
54849091 |
ttaa |
54849094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 189
Target Start/End: Original strand, 54849065 - 54849111
Alignment:
| Q |
143 |
aactccattccttgttatctcccaatttaactatattatatagagga |
189 |
Q |
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| T |
54849065 |
aactccatttcatattatctcccaatttaactttattatatagagga |
54849111 |
T |
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