View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18642_low_3 (Length: 501)
Name: NF18642_low_3
Description: NF18642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18642_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 100 - 477
Target Start/End: Original strand, 33582896 - 33583277
Alignment:
| Q |
100 |
taatcatataagcaccgtctcttctttaggtcattcacctat----tgatgcttctcagacaggtatacatagttttatttcttgttttattcattcttc |
195 |
Q |
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| T |
33582896 |
taatcatataagcaccgtctcttctttaggtcattcacctatatattgatgcttctcagacaggtatacatagttttatttcttgttttattcattcttc |
33582995 |
T |
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| Q |
196 |
atctgattattctctaaaagattcatacataagctatgatcacaattgtaannnnnnnaattgttttacatcattttacaagattaaacctataaatgct |
295 |
Q |
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| T |
33582996 |
atctgattattctctaaaagattgatatataagctatgatcacaattgtaattcttttaattgttttacttcattttacaagattaaacctataaatgct |
33583095 |
T |
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| Q |
296 |
aaccttccaaatggtttttctattttagtccaccatgctagtaatgttcatttttccccatatttatttcgatcaccaatttttatattcctcagatttc |
395 |
Q |
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| T |
33583096 |
aaccttccaaatggtttttctattttagtccatcatgctagtaatgttcattttttcccatatttatttcgatcaccaatttttatattcctcaaatttc |
33583195 |
T |
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| Q |
396 |
aatctcgatctaaaatatgtaattcattatcttcatttgtccagttttccactaagagttctgttatccaggatttgtaatc |
477 |
Q |
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| T |
33583196 |
aaactcgatctaaaatatgtaaatcattatcttgctttgtccagttttccactaagagttctgttatccaggatttgtaatc |
33583277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 126 - 182
Target Start/End: Original strand, 25122857 - 25122913
Alignment:
| Q |
126 |
taggtcattcacctattgatgcttctcagacaggtatacatagttttatttcttgtt |
182 |
Q |
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| T |
25122857 |
taggtcattcacctagtgatgcttctcagataggtatatatagtgttatttcttgtt |
25122913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 258 - 334
Target Start/End: Original strand, 25122987 - 25123063
Alignment:
| Q |
258 |
gttttacatcattttacaagattaaacctataaatgctaaccttccaaatggtttttctattttagtccaccatgct |
334 |
Q |
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| T |
25122987 |
gttttacttcattttacaagattaaacttatacatgttaatcttccaaatggttcttctgttttagttcaacatgct |
25123063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 18475429 - 18475495
Alignment:
| Q |
258 |
gttttacatcattttacaagattaaacctataaatgctaaccttccaaatggtttttctattttagt |
324 |
Q |
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|||||||||||||||| || ||||||||||| |||| ||| ||||||||| ||| ||| ||||||| |
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| T |
18475429 |
gttttacatcattttataaaattaaacctatcaatgttaatcttccaaattgttcatctgttttagt |
18475495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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