View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18642_low_5 (Length: 484)

Name: NF18642_low_5
Description: NF18642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18642_low_5
NF18642_low_5
[»] chr8 (10 HSPs)
chr8 (7-482)||(44082730-44083205)
chr8 (7-298)||(23942264-23942555)
chr8 (254-359)||(24793945-24794050)
chr8 (254-365)||(11394183-11394294)
chr8 (261-362)||(12134529-12134630)
chr8 (261-345)||(7555648-7555732)
chr8 (85-143)||(16421067-16421125)
chr8 (303-365)||(43253560-43253622)
chr8 (295-359)||(7452587-7452651)
chr8 (288-316)||(43612767-43612795)
[»] chr7 (16 HSPs)
chr7 (7-482)||(18767355-18767830)
chr7 (7-438)||(8771381-8771812)
chr7 (7-482)||(34457876-34458351)
chr7 (7-482)||(18671117-18671592)
chr7 (7-135)||(41801401-41801529)
chr7 (254-365)||(19728681-19728792)
chr7 (261-437)||(17855937-17856113)
chr7 (76-161)||(5326787-5326872)
chr7 (261-365)||(41339726-41339830)
chr7 (7-86)||(6909996-6910075)
chr7 (256-365)||(31025338-31025447)
chr7 (303-369)||(47105441-47105507)
chr7 (261-342)||(5326971-5327052)
chr7 (325-378)||(40617397-40617450)
chr7 (82-143)||(46623727-46623788)
chr7 (261-317)||(45943052-45943108)
[»] chr5 (15 HSPs)
chr5 (7-482)||(38357414-38357889)
chr5 (7-399)||(11817737-11818129)
chr5 (7-300)||(3168425-3168718)
chr5 (7-156)||(19181879-19182026)
chr5 (7-257)||(6866399-6866649)
chr5 (7-332)||(29094375-29094700)
chr5 (7-242)||(16488268-16488502)
chr5 (254-365)||(19513300-19513411)
chr5 (7-135)||(13836364-13836492)
chr5 (254-371)||(4400071-4400188)
chr5 (262-362)||(35122544-35122644)
chr5 (355-452)||(6866682-6866779)
chr5 (261-362)||(30509883-30509984)
chr5 (261-362)||(30550223-30550324)
chr5 (325-378)||(7961807-7961860)
[»] scaffold0006 (1 HSPs)
scaffold0006 (7-482)||(42085-42560)
[»] chr3 (13 HSPs)
chr3 (7-482)||(45684123-45684598)
chr3 (7-482)||(42675156-42675631)
chr3 (70-482)||(15481475-15481887)
chr3 (7-482)||(18368673-18369148)
chr3 (137-482)||(36708987-36709332)
chr3 (7-294)||(20822397-20822690)
chr3 (7-155)||(36708828-36708976)
chr3 (254-365)||(14867620-14867731)
chr3 (7-64)||(15483919-15483976)
chr3 (261-340)||(26010248-26010327)
chr3 (85-143)||(2813557-2813615)
chr3 (244-365)||(29309592-29309713)
chr3 (82-143)||(30167402-30167463)
[»] chr2 (8 HSPs)
chr2 (7-482)||(28400268-28400743)
chr2 (7-482)||(16213132-16213607)
chr2 (7-310)||(37643445-37643749)
chr2 (7-482)||(8065944-8066419)
chr2 (19-482)||(35487796-35488259)
chr2 (261-344)||(36804113-36804196)
chr2 (303-365)||(10597959-10598021)
chr2 (261-317)||(22052828-22052884)
[»] chr6 (13 HSPs)
chr6 (7-482)||(21548795-21549270)
chr6 (7-445)||(24378724-24379162)
chr6 (7-482)||(9565314-9565789)
chr6 (7-254)||(26010819-26011066)
chr6 (8-482)||(23065764-23066242)
chr6 (261-347)||(33804982-33805068)
chr6 (303-365)||(13085782-13085844)
chr6 (262-362)||(4474900-4475000)
chr6 (266-333)||(11468787-11468854)
chr6 (86-143)||(25317880-25317937)
chr6 (86-143)||(26205374-26205431)
chr6 (261-317)||(25318055-25318111)
chr6 (261-317)||(26205549-26205605)
[»] chr4 (8 HSPs)
chr4 (7-482)||(26693874-26694350)
chr4 (7-286)||(46638904-46639183)
chr4 (254-365)||(42953329-42953440)
chr4 (199-316)||(53809980-53810097)
chr4 (270-344)||(4640535-4640609)
chr4 (82-134)||(7663305-7663357)
chr4 (244-352)||(29553588-29553696)
chr4 (7-74)||(50452026-50452093)
[»] chr1 (6 HSPs)
chr1 (7-482)||(34853359-34853834)
chr1 (262-362)||(16873330-16873430)
chr1 (255-369)||(39430473-39430587)
chr1 (303-365)||(20795911-20795973)
chr1 (85-143)||(32353354-32353412)
chr1 (303-365)||(49264799-49264861)
[»] scaffold0112 (1 HSPs)
scaffold0112 (261-482)||(15368-15589)
[»] scaffold0418 (1 HSPs)
scaffold0418 (82-134)||(7697-7749)
[»] scaffold0308 (1 HSPs)
scaffold0308 (262-362)||(17348-17448)


Alignment Details
Target: chr8 (Bit Score: 404; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 7 - 482
Target Start/End: Complemental strand, 44083205 - 44082730
Alignment:
Q  7 gtctccacgtgaccacaaccagaaacacataagatatcatccgcggggacaacaccacgaatcgccagattagctttcgttggtaatcgatctcggataa 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||    
T  44083205 gtctccacgtgaccacaaccagaaacacataagatatcatccgcggggacaacaccacgaattgccagattagctttcgttggtaaacaatctcggataa 44083106  T
Q  107 gccgccacgcaaaaactgaaaccttcaaatgaacctgaggatgccacactaactcaaagggtaatcccatctgagaatcatccccaatcgtcaacaaatc 206  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44083105 gccgccacgcaaaaactgaaaccttcaaaggaacctgcggatgccacactaactcaaagggtaatcccatctgagaatcatccccaatcgtcaacaaatc 44083006  T
Q  207 ataggcacctctcacagagtacccctctgcagtatctggaagtcactcccaaaaatctgaaacattaggaaccaaagagatatcaaatagtaacgcccta 306  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44083005 ataggcacctctcacagagtacccctctgcagtatctggaagccactcccaaaaatctgaaacattaggaaccaaagagatatcaaatagtaacgcccta 44082906  T
Q  307 cactcctctagtaaaagctcctcccaagcccacaacctacgcctcctcctccacccctcaccatccttctccattcccaaagagaacaaagaggccaccg 406  Q
    |||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||| ||||||| |||  | ||||||||||||||||| |||||||    
T  44082905 cactcctctagtaaaagctcatcccaagcccacaatctacgcctccacctccacccctccccatcctgctctgtacccaaagagaacaaagatgccaccg 44082806  T
Q  407 taatagttttattctctgctaagtcaaacaagcggggaatccgcactcaaagcggagtacctccaatccacctatg 482  Q
    |||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  44082805 taatggttttattctctgctaagtcaaacaagcggggaaaccgcacacaaagcggagtacctccaatccacctatg 44082730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 7 - 298
Target Start/End: Original strand, 23942264 - 23942555
Alignment:
Q  7 gtctccacgtgaccacaaccagaaacacataagatatcatccgcggggacaacaccacgaatcgccagattagctttcgttggtaatcgatctcggataa 106  Q
    ||||||||||||||||| || |||||||| |||||||||||||| || | |||||||||||| ||||| ||||||||||||| || |||||| || ||||    
T  23942264 gtctccacgtgaccacaccctgaaacacaaaagatatcatccgcaggaataacaccacgaatagccaggttagctttcgttgttagtcgatcccgaataa 23942363  T
Q  107 gccgccacgcaaaaactgaaaccttcaaatgaacctgaggatgccacactaactcaaagggtaatcccatctgagaatcatccccaatcgtcaacaaatc 206  Q
    ||| ||| ||||||||||| ||||||||| |||| ||| |||||||||| || ||||| ||||  |||||||||||| |||| ||    |  ||||||||    
T  23942364 gcctccaagcaaaaactgagaccttcaaaggaacttgatgatgccacaccaattcaaaaggtatgcccatctgagaaacatcaccgtcagataacaaatc 23942463  T
Q  207 ataggcacctctcacagagtacccctctgcagtatctggaagtcactcccaaaaatctgaaacattaggaaccaaagagatatcaaatagta 298  Q
    ||||||||||||||| |||| |||| |  ||||||| || || |||||||| | |||||||||||||||||||||| |||||||||||||||    
T  23942464 ataggcacctctcacggagtgccccacaacagtatcaggtagccactcccatatatctgaaacattaggaaccaaatagatatcaaatagta 23942555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 254 - 359
Target Start/End: Original strand, 24793945 - 24794050
Alignment:
Q  254 cccaaaaatctgaaacattaggaaccaaagagatatcaaatagtaacgccctacactcctctagtaaaagctcctcccaagcccacaacctacgcctcct 353  Q
    ||||| ||||||||| |||||||| |||||| | |||||  ||||| || ||||||||||||| ||||| ||||||||| ||||||||||| |||||||     
T  24793945 cccaagaatctgaaatattaggaaacaaagaaacatcaagcagtaatgctctacactcctctaataaaacctcctcccacgcccacaacctccgcctccg 24794044  T
Q  354 cctcca 359  Q
    ||||||    
T  24794045 cctcca 24794050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 254 - 365
Target Start/End: Complemental strand, 11394294 - 11394183
Alignment:
Q  254 cccaaaaatctgaaacattaggaaccaaagagatatcaaatagtaacgccctacactcctctagtaaaagctcctcccaagcccacaacctacgcctcct 353  Q
    ||||| ||||||||| |||||||| |||| | |  ||||  ||||| |||||||||||||||| ||||| ||||||||| ||||||||||| |||||||     
T  11394294 cccaagaatctgaaatattaggaaacaaaaaaacttcaagcagtaaggccctacactcctctaataaaacctcctcccacgcccacaacctccgcctcca 11394195  T
Q  354 cctccacccctc 365  Q
     |||||||||||    
T  11394194 actccacccctc 11394183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 261 - 362
Target Start/End: Original strand, 12134529 - 12134630
Alignment:
Q  261 atctgaaacattaggaaccaaagagatatcaaatagtaacgccctacactcctctagtaaaagctcctcccaagcccacaacctacgcctcctcctccac 360  Q
    |||||||||||||||||  | ||| |  ||||||||||| ||||||||||||||||  ||   ||||||||| ||||||||| |||||| || |||||||    
T  12134529 atctgaaacattaggaaaaacagaaacgtcaaatagtaaagccctacactcctctaccaagtcctcctcccacgcccacaacgtacgccgccacctccac 12134628  T
Q  361 cc 362  Q
    ||    
T  12134629 cc 12134630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 261 - 345
Target Start/End: Original strand, 7555648 - 7555732
Alignment:
Q  261 atctgaaacattaggaaccaaagagatatcaaatagtaacgccctacactcctctagtaaaagctcctcccaagcccacaaccta 345  Q
    ||||||||||||||||| |||||| | |||||  | ||| |||||||||||||||| ||||  |||||||||  |||||||||||    
T  7555648 atctgaaacattaggaaacaaagaaacatcaaccaataaagccctacactcctctaataaattctcctcccacacccacaaccta 7555732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 16421125 - 16421067
Alignment:
Q  85 gttggtaatcgatctcggataagccgccacgcaaaaactgaaaccttcaaatgaacctg 143  Q
    |||||||| ||||| ||||  ||||||||||||||||| |||||||||||  |||||||    
T  16421125 gttggtaaacgatcacggaggagccgccacgcaaaaacggaaaccttcaagggaacctg 16421067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 365
Target Start/End: Complemental strand, 43253622 - 43253560
Alignment:
Q  303 cctacactcctctagtaaaagctcctcccaagcccacaacctacgcctcctcctccacccctc 365  Q
    ||||||||||||||  | || ||||||||| ||||||||||| |||||||  |||||||||||    
T  43253622 cctacactcctctaagacaatctcctcccacgcccacaacctccgcctccgactccacccctc 43253560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 295 - 359
Target Start/End: Original strand, 7452587 - 7452651
Alignment:
Q  295 agtaacgccctacactcctctagtaaaagctcctcccaagcccacaacctacgcctcctcctcca 359  Q
    ||||| |||||||||||||||| ||| | |||||||||   |||||| |||||||||| ||||||    
T  7452587 agtaaagccctacactcctctaataacacctcctcccactgccacaatctacgcctccacctcca 7452651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 316
Target Start/End: Complemental strand, 43612795 - 43612767
Alignment:
Q  288 atcaaatagtaacgccctacactcctcta 316  Q
    |||||||||||||||||||||||||||||    
T  43612795 atcaaatagtaacgccctacactcctcta 43612767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 404; Significance: 0; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 7 - 482
Target Start/End: Original strand, 18767355 - 18767830
Alignment:
Q  7 gtctccacgtgaccacaaccagaaacacataagatatcatccgcggggacaacaccacgaatcgccagattagctttcgttggtaatcgatctcggataa 106  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  18767355 gtctccacgtgaccacaaccagaaacatataagatatcatccgcggggacaacaccatgaatcgccagattagctttcgttggtaatcgatctcggataa 18767454  T
Q  107 gccgccacgcaaaaactgaaaccttcaaatgaacctgaggatgccacactaactcaaagggtaatcccatctgagaatcatccccaatcgtcaacaaatc 206  Q
    ||| ||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18767455 gccaccacgcaaaaactgaaaccttcataggaacctaaggatgccacactaactcaaagggtaatcccatctgagaatcatccccaatcgtcaacaaatc 18767554  T
Q  207 ataggcacctctcacagagtacccctctgcagtatctggaagtcactcccaaaaatctgaaacattaggaaccaaagagatatcaaatagtaacgcccta 306  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18767555 ataggcacctctcacagagtacccctctgcagtatctggaagccactcccaaaaatctgaaacattaggaaccaaagagatatcaaatagtaacgcccta 18767654  T
Q  307 cactcctctagtaaaagctcctcccaagcccacaacctacgcctcctcctccacccctcaccatccttctccattcccaaagagaacaaagaggccaccg 406  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||| |||| | |||||||||||||||||||||||||    
T  18767655 cactcctctagtaaaagctcctcccaagcccacaatctacgcctccacctccacccctccccatcctgctccgtacccaaagagaacaaagaggccaccg 18767754  T
Q  407 taatagttttattctctgctaagtcaaacaagcggggaatccgcactcaaagcggagtacctccaatccacctatg 482  Q
    |||| |||||||||||||||||||||||||||||||||| |||||| ||||||  |||||||||||||||||||||    
T  18767755 taatggttttattctctgctaagtcaaacaagcggggaaaccgcacacaaagcaaagtacctccaatccacctatg 18767830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 7 - 438
Target Start/End: Original strand, 8771381 - 8771812
Alignment:
Q  7 gtctccacgtgaccacaaccagaaacacataagatatcatccgcggggacaacaccacgaatcgccagattagctttcgttggtaatcgatctcggataa 106  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||| |||||||    
T  8771381 gtctccacgtgaccacaactagaaacacagaagatatcatccgcggggacaacaccacgaatcacccgattagctttcgtaggtaatcgatcccggataa 8771480  T
Q  107 gccgccacgcaaaaactgaaaccttcaaatgaacctgaggatgccacactaactcaaagggtaatcccatctgagaatcatccccaatcgtcaacaaatc 206  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||| |||||  ||||||||||||||||||||||||||||    
T  8771481 gccgccacgcaaaaactgaaaccttcaaaggaacctgaggatgccacaccaactcaaaaggtaaacccataggagaatcatccccaatcgtcaacaaatc 8771580  T
Q  207 ataggcacctctcacagagtacccctctgcagtatctggaagtcactcccaaaaatctgaaacattaggaaccaaagagatatcaaatagtaacgcccta 306  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  8771581 ataggcacctctcacagagtacccctctgcattatctggaagccactcccaaacatctgaaacattaggaatcaaagagatatcaaatagtaacgcccta 8771680  T
Q  307 cactcctctagtaaaagctcctcccaagcccacaacctacgcctcctcctccacccctcaccatccttctccattcccaaagagaacaaagaggccaccg 406  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||  ||||||||||| ||||||| |||| | ||| |||||||||||||||||||||    
T  8771681 cactcctctagtaaaagctcctcccaagcccacagtctacgcctccaactccacccctccccatcctgctccgtacccgaagagaacaaagaggccaccg 8771780  T
Q  407 taatagttttattctctgctaagtcaaacaag 438  Q
    |||| |||||||| ||||||||||||||||||    
T  8771781 taatggttttattttctgctaagtcaaacaag 8771812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 7 - 482
Target Start/End: Complemental strand, 34458351 - 34457876
Alignment:
Q  7 gtctccacgtgaccacaaccagaaacacataagatatcatccgcggggacaacaccacgaatcgccagattagctttcgttggtaatcgatctcggataa 106  Q
    |||||||| | ||| |||||||| ||||| ||||||||||  ||||  | |||||||||| ||||||| |||||||||||||||||||||||||| ||||    
T  34458351 gtctccacataaccgcaaccagacacacaaaagatatcatttgcggaaataacaccacgagtcgccaggttagctttcgttggtaatcgatctcgaataa 34458252  T
Q  107 gccgccacgcaaaaactgaaaccttcaaatgaacctgaggatgccacactaactcaaagggtaatcccatctgagaatcatccccaatcgtcaacaaatc 206  Q
    |||||||||||||| |||||| ||||||| ||||||||||||||||||| |||||||| ||||||||||| |||||||| ||||| ||||||||||||||    
T  34458251 gccgccacgcaaaagctgaaaacttcaaaggaacctgaggatgccacaccaactcaaaaggtaatcccatatgagaatcctcccctatcgtcaacaaatc 34458152  T
Q  207 ataggcacctctcacagagtacccctctgcagtatctggaagtcactcccaaaaatctgaaacattaggaaccaaagagatatcaaatagtaacgcccta 306  Q
    |||||||||||||||||| || |||||||||||||| ||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  34458151 ataggcacctctcacagaatatccctctgcagtatccggaagccactcccaagtatctgaaacattaggaaccaaagagatatcaaatagtaacgcccta 34458052  T
Q  307 cactcctctagtaaaagctcctcccaagcccacaacctacgcctcctcctccacccctcaccatccttctccattcccaaagagaacaaagaggccaccg 406  Q
    ||||||||||||||||||||||| || ||||| |  |||| |||||  ||||||||||| || |||| |||| | |||||||||||||||||||| ||||    
T  34458051 cactcctctagtaaaagctcctctcacgcccaaagtctacacctccatctccacccctccccctcctgctccgtacccaaagagaacaaagaggctaccg 34457952  T
Q  407 taatagttttattctctgctaagtcaaacaagcggggaatccgcactcaaagcggagtacctccaatccacctatg 482  Q
    |||| ||||| ||||||||||||||||||||||||||||  ||||| |||||||||| ||||||||||||||||||    
T  34457951 taatggttttgttctctgctaagtcaaacaagcggggaaatcgcacacaaagcggagaacctccaatccacctatg 34457876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 7 - 482
Target Start/End: Original strand, 18671117 - 18671592
Alignment:
Q  7 gtctccacgtgaccacaaccagaaacacataagatatcatccgcggggacaacaccacgaatcgccagattagctttcgttggtaatcgatctcggataa 106  Q
    |||||||| ||||| || ||||||||||| ||||||||||||| ||| | |||||||||||| ||||| ||||||||||| |||| |||||| || ||||    
T  18671117 gtctccacatgaccgcacccagaaacacaaaagatatcatccgtgggaataacaccacgaatagccaggttagctttcgtcggtagtcgatcccgaataa 18671216  T
Q  107 gccgccacgcaaaaactgaaaccttcaaatgaacctgaggatgccacactaactcaaagggtaatcccatctgagaatcatccccaatcgtcaacaaatc 206  Q
    ||||||| |||||||  || |||||||||||||||||||||||||| || || ||||| |||||||||| |||||||||||| ||| | || ||||||||    
T  18671217 gccgccatgcaaaaatcgagaccttcaaatgaacctgaggatgccataccaaatcaaaaggtaatcccaactgagaatcatcaccattagttaacaaatc 18671316  T
Q  207 ataggcacctctcacagagtacccctctgcagtatctggaagtcactcccaaaaatctgaaacattaggaaccaaagagatatcaaatagtaacgcccta 306  Q
    ||||||||||||||| |||||| ||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  18671317 ataggcacctctcacggagtactcctctgcagtatcaggaagccactcccaaatatctgaaacattaggaaccaaagagatatcaaatagtaacgcccta 18671416  T
Q  307 cactcctctagtaaaagctcctcccaagcccacaacctacgcctcctcctccacccctcaccatccttctccattcccaaagagaacaaagaggccaccg 406  Q
    ||||||||||  |||  ||||||||| |||||||||||||||| ||  ||||||||||| ||| ||| |||||  ||||||||||||||||| ||||| |    
T  18671417 cactcctctaacaaagcctcctcccatgcccacaacctacgccgccaactccacccctccccaccctgctccagacccaaagagaacaaagaagccactg 18671516  T
Q  407 taatagttttattctctgctaagtcaaacaagcggggaatccgcactcaaagcggagtacctccaatccacctatg 482  Q
    |||| ||||| ||||| ||||||||||| || || |||| |||||| |||||||| | |||||| |||||||||||    
T  18671517 taatggttttgttctcagctaagtcaaataaacgaggaaaccgcacacaaagcggggaacctccgatccacctatg 18671592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 7 - 135
Target Start/End: Original strand, 41801401 - 41801529
Alignment:
Q  7 gtctccacgtgaccacaaccagaaacacataagatatcatccgcggggacaacaccacgaatcgccagattagctttcgttggtaatcgatctcggataa 106  Q
    |||||||| ||||| |||||||| ||||| ||||||||||  ||||  | ||||||| || ||||||| || ||||||||||||||||||||||| ||||    
T  41801401 gtctccacatgaccgcaaccagacacacaaaagatatcatttgcggaaataacaccatgagtcgccaggtttgctttcgttggtaatcgatctcgaataa 41801500  T
Q  107 gccgccacgcaaaaactgaaaccttcaaa 135  Q
    |||||||||||||||||||||||||||||    
T  41801501 gccgccacgcaaaaactgaaaccttcaaa 41801529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 254 - 365
Target Start/End: Original strand, 19728681 - 19728792
Alignment:
Q  254 cccaaaaatctgaaacattaggaaccaaagagatatcaaatagtaacgccctacactcctctagtaaaagctcctcccaagcccacaacctacgcctcct 353  Q
    ||||||||||||||| |||||||| |||||| | ||||| ||||||  ||||||||||||||| ||||| ||||||||| ||||||||||| || ||||     
T  19728681 cccaaaaatctgaaatattaggaaacaaagaaacatcaagtagtaagaccctacactcctctaataaaacctcctcccacgcccacaacctccgtctcca 19728780  T
Q  354 cctccacccctc 365  Q
     |||||||||||    
T  19728781 actccacccctc 19728792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 261 - 437
Target Start/End: Original strand, 17855937 - 17856113
Alignment:
Q  261 atctgaaacattaggaaccaaagagatatcaaatagtaacgccctacactcctctagtaaaagctcctcccaagcccacaacctacgcctcctcctccac 360  Q
    ||||||||||||||| | |||||| |||||||  ||||| ||| ||  |||||||| ||||  |||||||||||||||||||||||| || |  ||||||    
T  17855937 atctgaaacattaggcaacaaagaaatatcaagcagtaaagccttaagctcctctaataaattctcctcccaagcccacaacctacgtcttcaactccac 17856036  T
Q  361 ccctcaccatccttctccattcccaaagagaacaaagaggccaccgtaatagttttattctctgctaagtcaaacaa 437  Q
    || || ||  ||| |||||  || | |||||||| |   ||||||| ||| ||||| ||||| ||||||||||||||    
T  17856037 ccttcccctccctgctccaggccaagagagaacatattcgccaccgaaatggttttgttctcagctaagtcaaacaa 17856113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 161
Target Start/End: Original strand, 5326787 - 5326872
Alignment:
Q  76 ttagctttcgttggtaatcgatctcggataagccgccacgcaaaaactgaaaccttcaaatgaacctgaggatgccacactaactc 161  Q
    ||||||||||||||||| | |||| | || ||||| || ||||||||||  ||||||||| |||||||| |||||||||| |||||    
T  5326787 ttagctttcgttggtaagcaatcttgaatgagccgtcaagcaaaaactgttaccttcaaaggaacctgatgatgccacaccaactc 5326872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 261 - 365
Target Start/End: Original strand, 41339726 - 41339830
Alignment:
Q  261 atctgaaacattaggaaccaaagagatatcaaatagtaacgccctacactcctctagtaaaagctcctcccaagcccacaacctacgcctcctcctccac 360  Q
    ||||||||||| |||||  | ||||| |||||||||||| | |||||||||||||| |||   ||||||||| ||||||||||| |  | || |||||||    
T  41339726 atctgaaacatgaggaaaaacagagacatcaaatagtaaagtcctacactcctctaataattcctcctcccacgcccacaacctgcatcgccacctccac 41339825  T
Q  361 ccctc 365  Q
    |||||    
T  41339826 ccctc 41339830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 6909996 - 6910075
Alignment:
Q  7 gtctccacgtgaccacaaccagaaacacataagatatcatccgcggggacaacaccacgaatcgccagattagctttcgt 86  Q
    ||||||| ||||||||| ||  |||| || |||||||||||||| || | ||||| |||||| |||||||||||||||||    
T  6909996 gtctccaggtgaccacaccctaaaacgcaaaagatatcatccgcaggaataacacaacgaatagccagattagctttcgt 6910075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 256 - 365
Target Start/End: Complemental strand, 31025447 - 31025338
Alignment:
Q  256 caaaaatctgaaacattaggaaccaaagagatatcaaatagtaacgccctacactcctctagtaaaagctcctcccaagcccacaacctacgcctcctcc 355  Q
    ||||||||||||| || || || || ||| | ||||| |||||| | | ||||||||||||  | || ||||||||| ||||||||||| |||||||  |    
T  31025447 caaaaatctgaaatatcagtaaacagagaaacatcaagtagtaaagtcatacactcctctaagacaatctcctcccacgcccacaacctccgcctccaac 31025348  T
Q  356 tccacccctc 365  Q
    ||||||||||    
T  31025347 tccacccctc 31025338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 369
Target Start/End: Complemental strand, 47105507 - 47105441
Alignment:
Q  303 cctacactcctctagtaaaagctcctcccaagcccacaacctacgcctcctcctccacccctcacca 369  Q
    ||||||||||||||  | || ||||||||| ||||||||||  |||||||  |||||||||||||||    
T  47105507 cctacactcctctaagacaatctcctcccacgcccacaaccaccgcctccaactccacccctcacca 47105441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 342
Target Start/End: Original strand, 5326971 - 5327052
Alignment:
Q  261 atctgaaacattaggaaccaaagagatatcaaatagtaacgccctacactcctctagtaaaagctcctcccaagcccacaac 342  Q
    ||||||||||| |||||  | ||||| |||||||||||| | ||||||||||| || |||   ||||||||| |||||||||    
T  5326971 atctgaaacatgaggaaaaacagagacatcaaatagtaaagtcctacactcctttaataattcctcctcccacgcccacaac 5327052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 378
Target Start/End: Original strand, 40617397 - 40617450
Alignment:
Q  325 tcctcccaagcccacaacctacgcctcctcctccacccctcaccatccttctcc 378  Q
    |||||||||||  ||||||||||||||| ||||||| ||||||| |||| ||||    
T  40617397 tcctcccaagcaaacaacctacgcctccacctccacgcctcaccctcctcctcc 40617450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 46623727 - 46623788
Alignment:
Q  82 ttcgttggtaatcgatctcggataagccgccacgcaaaaactgaaaccttcaaatgaacctg 143  Q
    ||||||||||| ||||| ||||| || | ||||||||||||||| ||||||||  |||||||    
T  46623727 ttcgttggtaaacgatcccggatgagtctccacgcaaaaactgataccttcaagggaacctg 46623788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 317
Target Start/End: Original strand, 45943052 - 45943108
Alignment:
Q  261 atctgaaacattaggaaccaaagagatatcaaatagtaacgccctacactcctctag 317  Q
    ||||||||||||||||  |||||| | |||||  ||||| |||||||||||||||||    
T  45943052 atctgaaacattaggattcaaagaaacatcaagaagtaaagccctacactcctctag 45943108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 396; Significance: 0; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 7 - 482
Target Start/End: Original strand, 38357414 - 38357889
Alignment:
Q  7 gtctccacgtgaccacaaccagaaacacataagatatcatccgcggggacaacaccacgaatcgccagattagctttcgttggtaatcgatctcggataa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  38357414 gtctccacgtgaccacaaccagaaacacataagatatcatccgcggggacaaccccacgaatcgccagattagctttcgttggtaatcgatctcgaataa 38357513  T
Q  107 gccgccacgcaaaaactgaaaccttcaaatgaacctgaggatgccacactaactcaaagggtaatcccatctgagaatcatccccaatcgtcaacaaatc 206  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||| |||||| |||||  ||||||||||||    
T  38357514 gccgccacgcaaaaactgaaaccttcaaaggaacctgaggatgccacactaaatcaaaaggtaatcccatctgcgaatcacccccagacgtcaacaaatc 38357613  T
Q  207 ataggcacctctcacagagtacccctctgcagtatctggaagtcactcccaaaaatctgaaacattaggaaccaaagagatatcaaatagtaacgcccta 306  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  38357614 ataggcacctctcacagagtacccctctgcagtatctggaagccactcccaaaaatctgaaacattaggaaccaaacagatatcaaatagtaacgcccta 38357713  T
Q  307 cactcctctagtaaaagctcctcccaagcccacaacctacgcctcctcctccacccctcaccatccttctccattcccaaagagaacaaagaggccaccg 406  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||| |||||| |||||||||||||||||||||||||    
T  38357714 cactcctctagtaaaagctcctcccaagcccacaaactacgcctccacctccacccctccccatcctgctccatacccaaagagaacaaagaggccaccg 38357813  T
Q  407 taatagttttattctctgctaagtcaaacaagcggggaatccgcactcaaagcggagtacctccaatccacctatg 482  Q
    |||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||    
T  38357814 taatggttttattctctgctaagtcaaacaagcggggaaaccgcacacaaagcggagtacctccaatccatctatg 38357889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 7 - 399
Target Start/End: Original strand, 11817737 - 11818129
Alignment:
Q  7 gtctccacgtgaccacaaccagaaacacataagatatcatccgcggggacaacaccacgaatcgccagattagctttcgttggtaatcgatctcggataa 106  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11817737 gtctccacgtgaccacaaccagaaacacataagatatcatccgcagggacaacaccatgaatcgccagattagctttcgttggtaatcgatctcggataa 11817836  T
Q  107 gccgccacgcaaaaactgaaaccttcaaatgaacctgaggatgccacactaactcaaagggtaatcccatctgagaatcatccccaatcgtcaacaaatc 206  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11817837 gccgccacgcaaaaactgaaaccttcaaaggaacctgaggttgccacactaactcaaagggtaatcccatatgagaatcatccccaatcgtcaacaaatc 11817936  T
Q  207 ataggcacctctcacagagtacccctctgcagtatctggaagtcactcccaaaaatctgaaacattaggaaccaaagagatatcaaatagtaacgcccta 306  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11817937 ataggcacctctcacagagtacccctctgcagtatctggaagccactcccaaaaatctgaaacattaggaaccaaagagatatcaaatagtaacgcccta 11818036  T
Q  307 cactcctctagtaaaagctcctcccaagcccacaacctacgcctcctcctccacccctcaccatccttctccattcccaaagagaacaaagag 399  Q
    |||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||| ||||||| |||| | ||||||||||||||||||    
T  11818037 cactcctctagtaaaagctcctcccaagcctacaatctacgcctccacctccacccctccccatcctgctccgtacccaaagagaacaaagag 11818129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 7 - 300
Target Start/End: Complemental strand, 3168718 - 3168425
Alignment:
Q  7 gtctccacgtgaccacaaccagaaacacataagatatcatccgcggggacaacaccacgaatcgccagattagctttcgttggtaatcgatctcggataa 106  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  3168718 gtctccacgtgaccaccaccagaaacacaaaagatatcatccgcggggacaacaccacgaatcgtcagattagctttcgtaggtaatcgatctcggataa 3168619  T
Q  107 gccgccacgcaaaaactgaaaccttcaaatgaacctgaggatgccacactaactcaaagggtaatcccatctgagaatcatccccaatcgtcaacaaatc 206  Q
    ||||||||||||||| ||||||||||||| ||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  3168618 gccgccacgcaaaaattgaaaccttcaaaggaacctgaggatgtcacaccaactcaaaaggtaatcccatctgagaatcatccccaaacgtcaacaaatc 3168519  T
Q  207 ataggcacctctcacagagtacccctctgcagtatctggaagtcactcccaaaaatctgaaacattaggaaccaaagagatatcaaatagtaac 300  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  3168518 ataggcacctctcacagagtacccctctgcagtatctggaagccactcccaaacatctgaaacattaggaatcaaagagatatcaaatagtaac 3168425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 7 - 156
Target Start/End: Complemental strand, 19182026 - 19181879
Alignment:
Q  7 gtctccacgtgaccacaaccagaaacacataagatatcatccgcggggacaacaccacgaatcgccagattagctttcgttggtaatcgatctcggataa 106  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  19182026 gtctccacgtgaccacaaccagaaacaca--agatatcatccgcggggacaacaccacgaatcgccagattagctttcgtaggtaatcgatctcggataa 19181929  T
Q  107 gccgccacgcaaaaactgaaaccttcaaatgaacctgaggatgccacact 156  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  19181928 gccgccacgtaaaaactgaaaccttcaaaggaacctgaggatgccacact 19181879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 7 - 257
Target Start/End: Original strand, 6866399 - 6866649
Alignment:
Q  7 gtctccacgtgaccacaaccagaaacacataagatatcatccgcggggacaacaccacgaatcgccagattagctttcgttggtaatcgatctcggataa 106  Q
    |||||||||||||| || || |||||||| |||||||||||| | || | |||||||||||| ||||| | ||  |||||||||| || ||| || || |    
T  6866399 gtctccacgtgaccgcaccctgaaacacaaaagatatcatccacaggaataacaccacgaatagccaggtcagtgttcgttggtagtcaatcccgaatga 6866498  T
Q  107 gccgccacgcaaaaactgaaaccttcaaatgaacctgaggatgccacactaactcaaagggtaatcccatctgagaatcatccccaatcgtcaacaaatc 206  Q
    ||| | |||||||||| || ||||||||| |||||||| |||||||||| |||||||| ||||  ||||||| ||||||||| ||  | || ||||||||    
T  6866499 gcctcaacgcaaaaacagagaccttcaaaggaacctgatgatgccacaccaactcaaaaggtatgcccatctaagaatcatcaccgttagttaacaaatc 6866598  T
Q  207 ataggcacctctcacagagtacccctctgcagtatctggaagtcactccca 257  Q
    ||||||||||||||| ||||||||||| |||||||| ||||| ||||||||    
T  6866599 ataggcacctctcacggagtacccctcagcagtatcaggaagccactccca 6866649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 7 - 332
Target Start/End: Complemental strand, 29094700 - 29094375
Alignment:
Q  7 gtctccacgtgaccacaaccagaaacacataagatatcatccgcggggacaacaccacgaatcgccagattagctttcgttggtaatcgatctcggataa 106  Q
    ||||||||||||||||| || ||||| || |||||||||||| |  | | |||| |  |||| | ||| ||||||||||| |||| |||||| || | ||    
T  29094700 gtctccacgtgaccacatcctgaaacgcaaaagatatcatcctcatgaataacatcctgaatagtcaggttagctttcgtaggtagtcgatcccgaacaa 29094601  T
Q  107 gccgccacgcaaaaactgaaaccttcaaatgaacctgaggatgccacactaactcaaagggtaatcccatctgagaatcatccccaatcgtcaacaaatc 206  Q
    ||| ||| ||||||||||| ||||||| |||||| |    ||| || || | |||||| ||||  |||||||||||| |||| || |  |  ||||||||    
T  29094600 gcctccaagcaaaaactgacaccttcacatgaactttgttatggcaaaccatctcaaaaggtatgcccatctgagaaacatcaccgacagataacaaatc 29094501  T
Q  207 ataggcacctctcacagagtacccctctgcagtatctggaagtcactcccaaaaatctgaaacattaggaaccaaagagatatcaaatagtaacgcccta 306  Q
     ||||||||| |||| ||||||||| | |||| |||  | || |||||||| | ||||||||||||||||||||||||||||||||||||||  ||||||    
T  29094500 gtaggcacctttcacggagtaccccacagcaggatcaagtagccactcccatatatctgaaacattaggaaccaaagagatatcaaatagtagagcccta 29094401  T
Q  307 cactcctctagtaaaagctcctccca 332  Q
    ||||||||||| |||  |||||||||    
T  29094400 cactcctctagcaaagcctcctccca 29094375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 7 - 242
Target Start/End: Complemental strand, 16488502 - 16488268
Alignment:
Q  7 gtctccacgtgaccacaaccagaaacacataagatatcatccgcggggacaacaccacgaatcgccagattagctttcgttggtaatcgatctcggataa 106  Q
    ||||||||||||||||| || |||||||| ||||||||||| || || | || ||||||||| ||||  ||||||||||| |||| ||||||  | ||||    
T  16488502 gtctccacgtgaccacaccctgaaacacaaaagatatcatcagcaggaataa-accacgaatagccaagttagctttcgtaggtagtcgatcctgaataa 16488404  T
Q  107 gccgccacgcaaaaactgaaaccttcaaatgaacctgaggatgccacactaactcaaagggtaatcccatctgagaatcatccccaatcgtcaacaaatc 206  Q
    | | |||  |||||||||| ||||||||| |||| ||| |||| || || |||||||| ||||  |||||||||||| |||| ||  | |  |||||||     
T  16488403 gtctccaaacaaaaactgagaccttcaaaggaacttgatgatgtcaaaccaactcaaaaggtatgcccatctgagaaacatcaccgttagataacaaatt 16488304  T
Q  207 ataggcacctctcacagagtacccctctgcagtatc 242  Q
     |||||||||||||| ||||||||| | ||||||||    
T  16488303 gtaggcacctctcacggagtaccccacagcagtatc 16488268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 254 - 365
Target Start/End: Complemental strand, 19513411 - 19513300
Alignment:
Q  254 cccaaaaatctgaaacattaggaaccaaagagatatcaaatagtaacgccctacactcctctagtaaaagctcctcccaagcccacaacctacgcctcct 353  Q
    ||||| ||||||||| |||||||| |||||| |||||||  ||||| |||||||||||||||||||||| ||||||||| ||||||||||| |||||||     
T  19513411 cccaagaatctgaaatattaggaaacaaagaaatatcaagcagtaatgccctacactcctctagtaaaacctcctcccacgcccacaacctccgcctcca 19513312  T
Q  354 cctccacccctc 365  Q
     |||||||||||    
T  19513311 actccacccctc 19513300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 135
Target Start/End: Complemental strand, 13836492 - 13836364
Alignment:
Q  7 gtctccacgtgaccacaaccagaaacacataagatatcatccgcggggacaacaccacgaatcgccagattagctttcgttggtaatcgatctcggataa 106  Q
    |||| |||||||||||| || |||||| | ||||||||||| || || | |||| ||||||| ||||| |||||||||| ||||| ||||||  | ||||    
T  13836492 gtcttcacgtgaccacaccctgaaacataaaagatatcatctgcaggaataacatcacgaatagccaggttagctttcgatggtagtcgatcctgaataa 13836393  T
Q  107 gccgccacgcaaaaactgaaaccttcaaa 135  Q
    ||| ||| ||||||||||| || ||||||    
T  13836392 gcctccaagcaaaaactgagacattcaaa 13836364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 254 - 371
Target Start/End: Original strand, 4400071 - 4400188
Alignment:
Q  254 cccaaaaatctgaaacattaggaaccaaagagatatcaaatagtaacgccctacactcctctagtaaaagctcctcccaagcccacaacctacgcctcct 353  Q
    ||||| ||||||||| |||||||| |||||| | |||||  |||||  ||||||||||||||| ||||  ||||||||| |  |||||||| |||||||     
T  4400071 cccaagaatctgaaatattaggaaacaaagaaacatcaagcagtaagaccctacactcctctaataaaccctcctcccacgttcacaacctccgcctcca 4400170  T
Q  354 cctccacccctcaccatc 371  Q
     ||||||||||| |||||    
T  4400171 actccacccctccccatc 4400188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 262 - 362
Target Start/End: Complemental strand, 35122644 - 35122544
Alignment:
Q  262 tctgaaacattaggaaccaaagagatatcaaatagtaacgccctacactcctctagtaaaagctcctcccaagcccacaacctacgcctcctcctccacc 361  Q
    |||||||||||||  | |||||| | |||||  ||||| ||||||  |||||||| ||||  |||||||||||||||||||||||| |||| ||||||||    
T  35122644 tctgaaacattagacaacaaagaaacatcaagcagtaaagccctaagctcctctaataaagtctcctcccaagcccacaacctacgtctccacctccacc 35122545  T
Q  362 c 362  Q
    |    
T  35122544 c 35122544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 452
Target Start/End: Original strand, 6866682 - 6866779
Alignment:
Q  355 ctccacccctcaccatccttctccattcccaaagagaacaaagaggccaccgtaatagttttattctctgctaagtcaaacaagcggggaatccgcac 452  Q
    ||||||||||| ||| ||| |||||  |||| ||||||||||| |||||| ||||| ||||| ||||| | |||||||||||| || |||| ||||||    
T  6866682 ctccacccctccccaccctactccagacccatagagaacaaagtggccactgtaatggttttgttctcagataagtcaaacaaacgaggaaaccgcac 6866779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 261 - 362
Target Start/End: Complemental strand, 30509984 - 30509883
Alignment:
Q  261 atctgaaacattaggaaccaaagagatatcaaatagtaacgccctacactcctctagtaaaagctcctcccaagcccacaacctacgcctcctcctccac 360  Q
    ||||||||||||||| | |||||| | |||||  ||||| ||||||  |||||||| |||||  ||||||||||||||||| || |||||||  ||||||    
T  30509984 atctgaaacattaggcaacaaagaaacatcaagcagtaaagccctaagctcctctaataaaaattcctcccaagcccacaatcttcgcctccaactccac 30509885  T
Q  361 cc 362  Q
    ||    
T  30509884 cc 30509883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 261 - 362
Target Start/End: Complemental strand, 30550324 - 30550223
Alignment:
Q  261 atctgaaacattaggaaccaaagagatatcaaatagtaacgccctacactcctctagtaaaagctcctcccaagcccacaacctacgcctcctcctccac 360  Q
    ||||||||||||||| | |||||| | |||||  ||||| ||||||  |||||||| |||||  ||||||||||||||||| || |||||||  ||||||    
T  30550324 atctgaaacattaggcaacaaagaaacatcaagcagtaaagccctaagctcctctaataaaaattcctcccaagcccacaatcttcgcctccaactccac 30550225  T
Q  361 cc 362  Q
    ||    
T  30550224 cc 30550223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 378
Target Start/End: Original strand, 7961807 - 7961860
Alignment:
Q  325 tcctcccaagcccacaacctacgcctcctcctccacccctcaccatccttctcc 378  Q
    |||||||||||||||| ||||||||||| ||||||| || |||| |||| ||||    
T  7961807 tcctcccaagcccacagcctacgcctccacctccacgccccaccctcctcctcc 7961860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 7 - 482
Target Start/End: Original strand, 42085 - 42560
Alignment:
Q  7 gtctccacgtgaccacaaccagaaacacataagatatcatccgcggggacaacaccacgaatcgccagattagctttcgttggtaatcgatctcggataa 106  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  42085 gtctccacgtgaccacaaccagaaacacataagatatcatctgcggggacaacaccacgaatcgtcagattagctttcgttggtaatcgatctctgataa 42184  T
Q  107 gccgccacgcaaaaactgaaaccttcaaatgaacctgaggatgccacactaactcaaagggtaatcccatctgagaatcatccccaatcgtcaacaaatc 206  Q
     | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  42185 cctgccacgcaaaaactgaaaccttcaaaggaacctgaggatgccacactaactcaaagggtaatcccatctgagaatcatccccatttgtcaacaaatc 42284  T
Q  207 ataggcacctctcacagagtacccctctgcagtatctggaagtcactcccaaaaatctgaaacattaggaaccaaagagatatcaaatagtaacgcccta 306  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  42285 ataggcaccactcacagagtacccctctgcagtatctggaagccactccaaaaaatctaaaacattaggaaccaaagagatatcaaataataacgcccta 42384  T
Q  307 cactcctctagtaaaagctcctcccaagcccacaacctacgcctcctcctccacccctcaccatccttctccattcccaaagagaacaaagaggccaccg 406  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||  ||||||| ||| ||||||| |||| | |||||||||||||||||||||||||    
T  42385 cactcctctagtaaaagctcctcccaagcccacaatctacgcctccaactccacctctccccatcctgctccgtacccaaagagaacaaagaggccaccg 42484  T
Q  407 taatagttttattctctgctaagtcaaacaagcggggaatccgcactcaaagcggagtacctccaatccacctatg 482  Q
    |||| ||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||    
T  42485 taatggttttattctctgctaagtcaaacaagtggggaaaccgcacacaaagcggagtacctccaatccacctatg 42560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 7 - 482
Target Start/End: Original strand, 45684123 - 45684598
Alignment:
Q  7 gtctccacgtgaccacaaccagaaacacataagatatcatccgcggggacaacaccacgaatcgccagattagctttcgttggtaatcgatctcggataa 106  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  45684123 gtctccacgtgaccacaaccagaaacacagaagatatcatccgcggggacaacaccacgaatcgccagattagctttcgtaggtaatcgatcccggataa 45684222  T
Q  107 gccgccacgcaaaaactgaaaccttcaaatgaacctgaggatgccacactaactcaaagggtaatcccatctgagaatcatccccaatcgtcaacaaatc 206  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||| ||||| |||||||||||||||||||||||||||||    
T  45684223 gccgccacgcaaaaactgaaaccttcaaaggaacctgaggatgccacaccaactcaaaaggtaaacccatatgagaatcatccccaatcgtcaacaaatc 45684322  T
Q  207 ataggcacctctcacagagtacccctctgcagtatctggaagtcactcccaaaaatctgaaacattaggaaccaaagagatatcaaatagtaacgcccta 306  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  45684323 ataggcacctctcacagagtacccctctgcattatctggaagccactcccaaacatctgaaacattaggaatcaaagagatatcaaatagtaacgcccta 45684422  T
Q  307 cactcctctagtaaaagctcctcccaagcccacaacctacgcctcctcctccacccctcaccatccttctccattcccaaagagaacaaagaggccaccg 406  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||  ||||||||||| ||||||| |||| | ||| |||||||||||||||||||||    
T  45684423 cactcctctagtaaaagctcctcccaagcccacagtctacgcctccaactccacccctccccatcctgctccgtacccgaagagaacaaagaggccaccg 45684522  T
Q  407 taatagttttattctctgctaagtcaaacaagcggggaatccgcactcaaagcggagtacctccaatccacctatg 482  Q
    |||| |||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||    
T  45684523 taatggttttattctctgctaagtcaaacaagcggggaaaccgcacgcaaagaggagtacctccaatccacctatg 45684598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 7 - 482
Target Start/End: Complemental strand, 42675631 - 42675156
Alignment:
Q  7 gtctccacgtgaccacaaccagaaacacataagatatcatccgcggggacaacaccacgaatcgccagattagctttcgttggtaatcgatctcggataa 106  Q
    |||||||| |||||  ||||||| ||||| ||||||||||  ||||  | |||||||||| ||||||| || ||||||||||||||||||||| | ||||    
T  42675631 gtctccacatgaccgtaaccagacacacaaaagatatcatttgcggaaataacaccacgagtcgccaggtttgctttcgttggtaatcgatcttgaataa 42675532  T
Q  107 gccgccacgcaaaaactgaaaccttcaaatgaacctgaggatgccacactaactcaaagggtaatcccatctgagaatcatccccaatcgtcaacaaatc 206  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||||||    
T  42675531 gccgccacgcaaaaacagaaaccttcaaaggaacctgaggatgccacaccaactcaaaaggtaatcccatctgagaatcctcccctatcgtcaacaaatc 42675432  T
Q  207 ataggcacctctcacagagtacccctctgcagtatctggaagtcactcccaaaaatctgaaacattaggaaccaaagagatatcaaatagtaacgcccta 306  Q
    |||||||||||||||| | || |||||||||||||| ||||| |||||||||  |||||||||||||||||||| |||||||||||||||||||||||||    
T  42675431 ataggcacctctcacaaaatatccctctgcagtatccggaagccactcccaagtatctgaaacattaggaaccagagagatatcaaatagtaacgcccta 42675332  T
Q  307 cactcctctagtaaaagctcctcccaagcccacaacctacgcctcctcctccacccctcaccatccttctccattcccaaagagaacaaagaggccaccg 406  Q
    || ||||||||||||||||||||||| ||||| |  ||||||||||  ||||||||||| || |||| |||| | |||||||||||||||||||| ||||    
T  42675331 cattcctctagtaaaagctcctcccacgcccatagtctacgcctccatctccacccctccccctcctgctccgtacccaaagagaacaaagaggctaccg 42675232  T
Q  407 taatagttttattctctgctaagtcaaacaagcggggaatccgcactcaaagcggagtacctccaatccacctatg 482  Q
    |||| ||||| |||||| ||||||||||||||||||||| |||||| |||| ||||| |||||||| |||||||||    
T  42675231 taatggttttgttctctactaagtcaaacaagcggggaaaccgcacacaaaacggagaacctccaagccacctatg 42675156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 70 - 482
Target Start/End: Complemental strand, 15481887 - 15481475
Alignment:
Q  70 gccagattagctttcgttggtaatcgatctcggataagccgccacgcaaaaactgaaaccttcaaatgaacctgaggatgccacactaactcaaagggta 169  Q
    ||||| ||||||||||||||||||||||| |||| ||| ||||||||| ||||||| | ||||||| ||||||||||||||||||| || ||||| ||||    
T  15481887 gccaggttagctttcgttggtaatcgatcccggagaaggcgccacgcagaaactgagagcttcaaaggaacctgaggatgccacaccaaatcaaacggta 15481788  T
Q  170 atcccatctgagaatcatccccaatcgtcaacaaatcataggcacctctcacagagtacccctctgcagtatctggaagtcactcccaaaaatctgaaac 269  Q
    |||||| |||||||||||| ||  |||| |  || ||||||| | ||||||| ||||||||||||| |||||  ||||| |||||||||| |||||||||    
T  15481787 atcccaactgagaatcatcaccggtcgttagtaagtcataggaagctctcacggagtacccctctgtagtattaggaagccactcccaaatatctgaaac 15481688  T
Q  270 attaggaaccaaagagatatcaaatagtaacgccctacactcctctagtaaaagctcctcccaagcccacaacctacgcctcctcctccacccctcacca 369  Q
    ||| | |||||||||||||||||||||||||||||||||||||||||| |||  ||||||||| | ||| | |||| ||||||  ||||||||||| |||    
T  15481687 attggaaaccaaagagatatcaaatagtaacgccctacactcctctagcaaagcctcctcccacgtccatagcctaggcctccaactccacccctcccca 15481588  T
Q  370 tccttctccattcccaaagagaacaaagaggccaccgtaatagttttattctctgctaagtcaaacaagcggggaatccgcactcaaagcggagtacctc 469  Q
     ||| |||||  |||| |||||||||||| ||||||||||| ||||| |||||||||||||||||||| || |||| ||||||  ||||||| | |||||    
T  15481587 ccctgctccacgcccatagagaacaaagaagccaccgtaatggttttgttctctgctaagtcaaacaaacgaggaaaccgcacaaaaagcggtggacctc 15481488  T
Q  470 caatccacctatg 482  Q
    ||| |||||||||    
T  15481487 caaaccacctatg 15481475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 7 - 482
Target Start/End: Complemental strand, 18369148 - 18368673
Alignment:
Q  7 gtctccacgtgaccacaaccagaaacacataagatatcatccgcggggacaacaccacgaatcgccagattagctttcgttggtaatcgatctcggataa 106  Q
    ||||||| |||||| || ||||||||||| ||||||||||| ||  | | |||||||||||| ||||| ||||||||| |||||| |||||| |  ||||    
T  18369148 gtctccatgtgaccgcacccagaaacacaaaagatatcatctgcatgaataacaccacgaatagccaggttagctttcattggtagtcgatcccaaataa 18369049  T
Q  107 gccgccacgcaaaaactgaaaccttcaaatgaacctgaggatgccacactaactcaaagggtaatcccatctgagaatcatccccaatcgtcaacaaatc 206  Q
    | |||||||||||||| |||||||||| | |||||||| |||||||||| |||||||| |  |||||||  || ||||| || ||  | || ||||||||    
T  18369048 ggcgccacgcaaaaaccgaaaccttcagaggaacctgatgatgccacaccaactcaaacgaaaatcccaattgcgaatcctcgccgtttgttaacaaatc 18368949  T
Q  207 ataggcacctctcacagagtacccctctgcagtatctggaagtcactcccaaaaatctgaaacattaggaaccaaagagatatcaaatagtaacgcccta 306  Q
    ||||||| ||||||| |||||||||||||||||||| ||||| |||||||||| ||||||||||||||||  ||||||||||||||||||||| ||||||    
T  18368948 ataggcaactctcactgagtacccctctgcagtatcaggaagccactcccaaatatctgaaacattaggacacaaagagatatcaaatagtaatgcccta 18368849  T
Q  307 cactcctctagtaaaagctcctcccaagcccacaacctacgcctcctcctccacccctcaccatccttctccattcccaaagagaacaaagaggccaccg 406  Q
    ||||||||||| |||  |||||||||  ||||||||||||||| ||  | ||||||||| ||| ||| |||||  |||| |||||| | ||| ||||| |    
T  18368848 cactcctctagcaaagcctcctcccacacccacaacctacgccgccaacaccacccctccccaccctgctccagacccatagagaatatagaagccactg 18368749  T
Q  407 taatagttttattctctgctaagtcaaacaagcggggaatccgcactcaaagcggagtacctccaatccacctatg 482  Q
    |||| ||||| ||||| ||||||||||| || ||  |||  ||||| |||||||| | || |||||||||||||||    
T  18368748 taatggttttgttctcagctaagtcaaataatcgaagaaaacgcacacaaagcggggaacttccaatccacctatg 18368673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 137 - 482
Target Start/End: Original strand, 36708987 - 36709332
Alignment:
Q  137 gaacctgaggatgccacactaactcaaagggtaatcccatctgagaatcatccccaatcgtcaacaaatcataggcacctctcacagagtacccctctgc 236  Q
    |||| ||||||| |||||| |||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||||    
T  36708987 gaacttgaggataccacaccaactcaaaaggtaatcccatctgagaatcatcaccaatcgttaacaagtcataggcacctctcacggagtacccctctgc 36709086  T
Q  237 agtatctggaagtcactcccaaaaatctgaaacattaggaaccaaagagatatcaaatagtaacgccctacactcctctagtaaaagctcctcccaagcc 336  Q
    ||||||  |||| |||||||| | |||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||| |    |||||| || |||    
T  36709087 agtatccagaagccactcccatatatctgaaacattagaaaccaaagaaatatcaaatagtaacgccctacagtcctctagcatgttctcctcacacgcc 36709186  T
Q  337 cacaacctacgcctcctcctccacccctcaccatccttctccattcccaaagagaacaaagaggccaccgtaatagttttattctctgctaagtcaaaca 436  Q
    || | |||||||||||  ||||||||||| ||||||| |||| | ||||  ||||||||||| ||||||||||| ||||| |||||||||||||||||||    
T  36709187 catagcctacgcctccaactccacccctccccatcctgctccgtacccagggagaacaaagaagccaccgtaatggttttgttctctgctaagtcaaaca 36709286  T
Q  437 agcggggaatccgcactcaaagcggagtacctccaatccacctatg 482  Q
    |||| |||| | |||| || ||||| | ||||||||||||||||||    
T  36709287 agcgaggaaactgcacacacagcggggaacctccaatccacctatg 36709332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 7 - 294
Target Start/End: Complemental strand, 20822690 - 20822397
Alignment:
Q  7 gtctccacgtgaccacaaccagaaacacataagatatcatccgcggggacaacaccacgaatcgccagattagctttcgttggtaatcgatctcggataa 106  Q
    |||||||||||| | |||||| ||||||| || |||||||||| ||| |||||||||||| |||||||||||||||||||||| |||||||| || ||||    
T  20822690 gtctccacgtgaacgcaaccaaaaacacaaaatatatcatccgtgggaacaacaccacgagtcgccagattagctttcgttggcaatcgatcgcgaataa 20822591  T
Q  107 gccgccacgcaaaaactgaaaccttcaaatgaacctgaggatgccacactaactcaaagggtaatcccatctgagaatcatccccaatcgtcaaca---- 202  Q
    || |||||||||||||||||||||| ||| ||||||||||||||||||| || ||||| ||||| |||||  ||| |||||||||| | |||||||        
T  20822590 gctgccacgcaaaaactgaaaccttaaaaggaacctgaggatgccacaccaaatcaaaaggtaaacccattagaggatcatccccagtagtcaacaaatc 20822491  T
Q  203 --aatcataggcacctctcacagagtacccctctgcagtatctggaagtcactcccaaaaatctgaaacattaggaaccaaagagatatcaaat 294  Q
      |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  20822490 caaatcataggcacctctcacagagtacccctctgcagtatccggaagccactcccaaaaatctgaaacattaggaaccaaagagatatcaaat 20822397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 7 - 155
Target Start/End: Original strand, 36708828 - 36708976
Alignment:
Q  7 gtctccacgtgaccacaaccagaaacacataagatatcatccgcggggacaacaccacgaatcgccagattagctttcgttggtaatcgatctcggataa 106  Q
    |||||||||||||| |||||||||||||| ||||||| ||||||||  | |||||||||| | ||||| |||||||||||||||||||||||||| ||||    
T  36708828 gtctccacgtgaccgcaaccagaaacacaaaagatataatccgcggaaataacaccacgagttgccaggttagctttcgttggtaatcgatctcgaataa 36708927  T
Q  107 gccgccacgcaaaaactgaaaccttcaaatgaacctgaggatgccacac 155  Q
    |||| |||  ||||||||| ||||||||| ||||||| |||| ||||||    
T  36708928 gccgtcacataaaaactgagaccttcaaaggaacctgtggataccacac 36708976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 254 - 365
Target Start/End: Complemental strand, 14867731 - 14867620
Alignment:
Q  254 cccaaaaatctgaaacattaggaaccaaagagatatcaaatagtaacgccctacactcctctagtaaaagctcctcccaagcccacaacctacgcctcct 353  Q
    ||||| ||||||||| ||||||||||||||| | ||||| || ||| |||||||||||||||| ||||| ||||||||| ||||||||||| || ||||     
T  14867731 cccaagaatctgaaatattaggaaccaaagaaacatcaagtattaaggccctacactcctctaataaaacctcctcccacgcccacaacctccgtctcca 14867632  T
Q  354 cctccacccctc 365  Q
     |||||||||||    
T  14867631 actccacccctc 14867620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 15483976 - 15483919
Alignment:
Q  7 gtctccacgtgaccacaaccagaaacacataagatatcatccgcggggacaacaccac 64  Q
    |||||||||||||| |||||||||||| | |||||||||||||| || | ||||||||    
T  15483976 gtctccacgtgaccgcaaccagaaacagaaaagatatcatccgcaggaataacaccac 15483919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 340
Target Start/End: Original strand, 26010248 - 26010327
Alignment:
Q  261 atctgaaacattaggaaccaaagagatatcaaatagtaacgccctacactcctctagtaaaagctcctcccaagcccaca 340  Q
    ||||||||||||||||| || ||| | |||| ||||||| | ||||||||||||||  ||   |||||||||||||||||    
T  26010248 atctgaaacattaggaaacacagaaacatcacatagtaaagtcctacactcctctaccaattcctcctcccaagcccaca 26010327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 2813615 - 2813557
Alignment:
Q  85 gttggtaatcgatctcggataagccgccacgcaaaaactgaaaccttcaaatgaacctg 143  Q
    |||||||| ||||| ||||| |||| |||||||||||| |||||||||||  |||||||    
T  2813615 gttggtaaacgatcacggatgagcctccacgcaaaaacggaaaccttcaagggaacctg 2813557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 365
Target Start/End: Original strand, 29309592 - 29309713
Alignment:
Q  244 ggaagtcactcccaaaaatctgaaacattaggaaccaaagagatatcaaatagtaacgccctacactcctctagtaaaagctcctcccaagcccacaacc 343  Q
    ||||| ||| |||||  ||||||||||||||||  ||| || | |||||  ||||||||||||||||| ||||| ||   |||||||||   ||| ||||    
T  29309592 ggaagccacacccaactatctgaaacattaggattcaatgaaacatcaagaagtaacgccctacactcatctagcaactcctcctcccactgccataacc 29309691  T
Q  344 tacgcctcctcctccacccctc 365  Q
    |||| |||| ||||||| ||||    
T  29309692 tacgtctccacctccacacctc 29309713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 143
Target Start/End: Complemental strand, 30167463 - 30167402
Alignment:
Q  82 ttcgttggtaatcgatctcggataagccgccacgcaaaaactgaaaccttcaaatgaacctg 143  Q
    ||||||||||||||||| ||||  || | |||||||||||||||||| |||||  |||||||    
T  30167463 ttcgttggtaatcgatcacggaggagtctccacgcaaaaactgaaacattcaagggaacctg 30167402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 7 - 482
Target Start/End: Complemental strand, 28400743 - 28400268
Alignment:
Q  7 gtctccacgtgaccacaaccagaaacacataagatatcatccgcggggacaacaccacgaatcgccagattagctttcgttggtaatcgatctcggataa 106  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  28400743 gtctccacgtgaccacaaccagaaacacagaagatatcatccgcggggacaacaccacgaatcgccagattagctttcgtaggtaatcgatcccggataa 28400644  T
Q  107 gccgccacgcaaaaactgaaaccttcaaatgaacctgaggatgccacactaactcaaagggtaatcccatctgagaatcatccccaatcgtcaacaaatc 206  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||| ||||| ||||| |||||||||||||||||||||||||||||    
T  28400643 gccgccacgcaaaaactgaaaccttcaaaggaacctgaggatgccacaccaacttaaaaggtaaacccatatgagaatcatccccaatcgtcaacaaatc 28400544  T
Q  207 ataggcacctctcacagagtacccctctgcagtatctggaagtcactcccaaaaatctgaaacattaggaaccaaagagatatcaaatagtaacgcccta 306  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  28400543 ataggcacctctcacagagtacccctctgcattatctggaagccactcccaaacatctgaaacattaggaatcaaagagatatcaaatagtaacgcccta 28400444  T
Q  307 cactcctctagtaaaagctcctcccaagcccacaacctacgcctcctcctccacccctcaccatccttctccattcccaaagagaacaaagaggccaccg 406  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||  ||||||||||| ||||||| |||| | ||| ||||||||||||| |||||||    
T  28400443 cactcctctagtaaaagctcctcccaagcccacagtctacgcctccaactccacccctccccatcctgctccgtacccgaagagaacaaagatgccaccg 28400344  T
Q  407 taatagttttattctctgctaagtcaaacaagcggggaatccgcactcaaagcggagtacctccaatccacctatg 482  Q
    |||| |||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||    
T  28400343 taatggttttattctctgctaagtcaaacaagcggggaaaccgcacgcaaagaggagtacctccaatccacctatg 28400268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 7 - 482
Target Start/End: Original strand, 16213132 - 16213607
Alignment:
Q  7 gtctccacgtgaccacaaccagaaacacataagatatcatccgcggggacaacaccacgaatcgccagattagctttcgttggtaatcgatctcggataa 106  Q
    |||||||||||||| |||||||||||||| ||||||||||| ||||  | ||||||| || ||||||| |||||||||||||||||||||||||| ||||    
T  16213132 gtctccacgtgaccgcaaccagaaacacaaaagatatcatctgcggaaataacaccatgagtcgccaggttagctttcgttggtaatcgatctcgaataa 16213231  T
Q  107 gccgccacgcaaaaactgaaaccttcaaatgaacctgaggatgccacactaactcaaagggtaatcccatctgagaatcatccccaatcgtcaacaaatc 206  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  16213232 gccgccacgcaaaaacagaaaccttcaaaggaacctgaggatgccacaccaactcaaaaggtaatcctatctgagaatcatccccaatcgtcaacaaatc 16213331  T
Q  207 ataggcacctctcacagagtacccctctgcagtatctggaagtcactcccaaaaatctgaaacattaggaaccaaagagatatcaaatagtaacgcccta 306  Q
    |||||||||||||||| ||||||||| ||||||||| ||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  16213332 ataggcacctctcacaaagtacccctttgcagtatccggaagccactcccaaatatctaaaacattaggaaccaaagagatatcaaatagtaacgcccta 16213431  T
Q  307 cactcctctagtaaaagctcctcccaagcccacaacctacgcctcctcctccacccctcaccatccttctccattcccaaagagaacaaagaggccaccg 406  Q
    |||||||||||||||| ||||||||| ||||| | |||||||||||  ||||| |||||  |||||| |||| | |||||||||||||||||||||||||    
T  16213432 cactcctctagtaaaatctcctcccacgcccaaagcctacgcctccaactccatccctccacatcctgctccgtacccaaagagaacaaagaggccaccg 16213531  T
Q  407 taatagttttattctctgctaagtcaaacaagcggggaatccgcactcaaagcggagtacctccaatccacctatg 482  Q
    |||| ||||| ||||||| |||||||||||||| ||||| || ||| |||||||||| ||||||||||||||||||    
T  16213532 taatggttttgttctctgttaagtcaaacaagcagggaaaccacacacaaagcggagaacctccaatccacctatg 16213607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 7 - 310
Target Start/End: Original strand, 37643445 - 37643749
Alignment:
Q  7 gtctccacgtgaccacaaccagaaacacataagatatcatccgcggggacaacaccacgaatcgccagattagctttcgttggtaatcgatctcggataa 106  Q
    |||||||||||| | |||||||||||||| ||||||||||||||||  | |||||||||| ||||||| |||||||||||||||||||||||||| ||||    
T  37643445 gtctccacgtgatcgcaaccagaaacacaaaagatatcatccgcggaaataacaccacgagtcgccaggttagctttcgttggtaatcgatctcgaataa 37643544  T
Q  107 gccgccacgcaaaaactgaaaccttcaaatgaacctgaggatgccacactaactcaaagggtaatcccatctgagaatcatccccaatcgtcaacaaatc 206  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  37643545 gccgccgcgcaaaaactgaaaccttcaaaggaacctgaggatgccacaccaactcaaaaggtaatcccatctgagaatcatccccaatcgtcaacaaatc 37643644  T
Q  207 ataggcacctctcacagagtacccctctgcagtatctggaagtcactcccaaaaatctg-aaacattaggaaccaaagagatatcaaatagtaacgccct 305  Q
    ||||||||||||||||||||||| |||||||||||  |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  37643645 ataggcacctctcacagagtacctctctgcagtattcggaagtcactcccaaatatctgaaaacattaggaaccaaagagatatcaaatagtaacgccct 37643744  T
Q  306 acact 310  Q
    |||||    
T  37643745 acact 37643749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 7 - 482
Target Start/End: Complemental strand, 8066419 - 8065944
Alignment:
Q  7 gtctccacgtgaccacaaccagaaacacataagatatcatccgcggggacaacaccacgaatcgccagattagctttcgttggtaatcgatctcggataa 106  Q
    ||||||||||||||||| || |||||||| ||||||||||| || || | |||||||||||| | |||||||||||||||||||| |||||| || ||||    
T  8066419 gtctccacgtgaccacaccctgaaacacaaaagatatcatctgcaggaataacaccacgaatagtcagattagctttcgttggtagtcgatcccgaataa 8066320  T
Q  107 gccgccacgcaaaaactgaaaccttcaaatgaacctgaggatgccacactaactcaaagggtaatcccatctgagaatcatccccaatcgtcaacaaatc 206  Q
    ||| ||| ||||||||||| ||||||||| |||| ||| |||||||||| |||||||| ||||  ||||| |||||| |||| ||    |  ||||||||    
T  8066319 gcctccaagcaaaaactgagaccttcaaaggaacttgatgatgccacaccaactcaaaaggtatgcccatatgagaaacatcaccgtcagataacaaatc 8066220  T
Q  207 ataggcacctctcacagagtacccctctgcagtatctggaagtcactcccaaaaatctgaaacattaggaaccaaagagatatcaaatagtaacgcccta 306  Q
    ||||||||||||||| ||||||||| |  ||||||| |  || |||||||| | |||||||||||||||||||||||||||||||||||||| |||||||    
T  8066219 ataggcacctctcacggagtaccccacatcagtatcagacagccactcccatatatctgaaacattaggaaccaaagagatatcaaatagtagcgcccta 8066120  T
Q  307 cactcctctagtaaaagctcctcccaagcccacaacctacgcctcctcctccacccctcaccatccttctccattcccaaagagaacaaagaggccaccg 406  Q
    ||||||||||| | |  ||||||||| |||||||||||||||| ||  ||||||||||| ||| ||| |||||  |||| |||||||||||  ||||| |    
T  8066119 cactcctctagcatagcctcctcccacgcccacaacctacgccgccaactccacccctccccaccctgctccagacccatagagaacaaagtagccactg 8066020  T
Q  407 taatagttttattctctgctaagtcaaacaagcggggaatccgcactcaaagcggagtacctccaatccacctatg 482  Q
    |||| ||||| ||||| | |||||||||||||||||||| || ||| |  ||| | | ||| ||||||||||||||    
T  8066019 taatggttttgttctcagataagtcaaacaagcggggaaaccccacactgagcagggaaccgccaatccacctatg 8065944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 19 - 482
Target Start/End: Original strand, 35487796 - 35488259
Alignment:
Q  19 ccacaaccagaaacacataagatatcatccgcggggacaacaccacgaatcgccagattagctttcgttggtaatcgatctcggataagccgccacgcaa 118  Q
    ||||| || |||||||| |||||||||||||| || | |||||||||||| ||||| ||||||||||| |||| |||||| || ||||||| ||| ||||    
T  35487796 ccacaccctgaaacacaaaagatatcatccgcaggaataacaccacgaatagccaggttagctttcgtaggtagtcgatcccgaataagcctccaagcaa 35487895  T
Q  119 aaactgaaaccttcaaatgaacctgaggatgccacactaactcaaagggtaatcccatctgagaatcatccccaatcgtcaacaaatcataggcacctct 218  Q
    ||||||| ||||||||| |||| |||  || ||| || |||||||| ||||   |||| |||||| |||| ||    |  ||||||||||||||||||||    
T  35487896 aaactgagaccttcaaaggaacttgattataccaaaccaactcaaaaggtatgtccatatgagaaacatcaccgtcagataacaaatcataggcacctct 35487995  T
Q  219 cacagagtacccctctgcagtatctggaagtcactcccaaaaatctgaaacattaggaaccaaagagatatcaaatagtaacgccctacactcctctagt 318  Q
    ||| ||||||||| | |||||||| |  || |||||||| | ||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||     
T  35487996 cacggagtaccccacagcagtatcagatagccactcccatatatctgaaacattaggaaccaaagagatatcaaatagtagagccatacactcctctagc 35488095  T
Q  319 aaaagctcctcccaagcccacaacctacgcctcctcctccacccctcaccatccttctccattcccaaagagaacaaagaggccaccgtaatagttttat 418  Q
    |||  ||||||||| |||||||||||||||| ||  ||||||||||| ||| ||| |||||  |||| |||||||||||  ||||| ||||| ||||| |    
T  35488096 aaagcctcctcccacgcccacaacctacgccgccaactccacccctccccaccctgctccagacccatagagaacaaagtagccactgtaatggttttgt 35488195  T
Q  419 tctctgctaagtcaaacaagcggggaatccgcactcaaagcggagtacctccaatccacctatg 482  Q
    |||| |  ||||||||||||||||||| |||||| |  ||||| | ||| ||||||||||||||    
T  35488196 tctcagacaagtcaaacaagcggggaaaccgcacactgagcggggaaccgccaatccacctatg 35488259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 344
Target Start/End: Original strand, 36804113 - 36804196
Alignment:
Q  261 atctgaaacattaggaaccaaagagatatcaaatagtaacgccctacactcctctagtaaaagctcctcccaagcccacaacct 344  Q
    ||||||||||| ||| |  | ||||| |||||||||||| ||||||||||||||||  ||   ||||||||| |||||||||||    
T  36804113 atctgaaacatgagggaaaacagagacatcaaatagtaaagccctacactcctctaacaagtcctcctcccacgcccacaacct 36804196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 365
Target Start/End: Original strand, 10597959 - 10598021
Alignment:
Q  303 cctacactcctctagtaaaagctcctcccaagcccacaacctacgcctcctcctccacccctc 365  Q
    ||||||||||||||  | || ||||||||| ||||||||||| |||||||  |||||||||||    
T  10597959 cctacactcctctaagacaatctcctcccacgcccacaacctccgcctccaactccacccctc 10598021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 317
Target Start/End: Original strand, 22052828 - 22052884
Alignment:
Q  261 atctgaaacattaggaaccaaagagatatcaaatagtaacgccctacactcctctag 317  Q
    ||||||||||||||||  |||||| | |||||  ||||| |||||||||||||||||    
T  22052828 atctgaaacattaggattcaaagaaacatcaagaagtaaagccctacactcctctag 22052884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 7 - 482
Target Start/End: Original strand, 21548795 - 21549270
Alignment:
Q  7 gtctccacgtgaccacaaccagaaacacataagatatcatccgcggggacaacaccacgaatcgccagattagctttcgttggtaatcgatctcggataa 106  Q
    |||||||| | ||| |||||||| ||||| ||||||||||  ||||  | |||||||||| ||||||| || ||||||||||||||||||||||| ||||    
T  21548795 gtctccacataaccgcaaccagacacacaaaagatatcatttgcggaaagaacaccacgattcgccaggtttgctttcgttggtaatcgatctcgaataa 21548894  T
Q  107 gccgccacgcaaaaactgaaaccttcaaatgaacctgaggatgccacactaactcaaagggtaatcccatctgagaatcatccccaatcgtcaacaaatc 206  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||||||    
T  21548895 gccgccacgcaaaaactgaaaccttcaaaggaacctgaggatgccacaccaactcaaacggtaatcccatctgagaatcctcccctatcgtcaacaaatc 21548994  T
Q  207 ataggcacctctcacagagtacccctctgcagtatctggaagtcactcccaaaaatctgaaacattaggaaccaaagagatatcaaatagtaacgcccta 306  Q
    |||||||||||||||||| || |||||||||||||| ||||| |||||||||  |||||||||||||| ||||| ||||||||||||||||||||| |||    
T  21548995 ataggcacctctcacagaatatccctctgcagtatccggaagccactcccaagtatctgaaacattagtaaccagagagatatcaaatagtaacgctcta 21549094  T
Q  307 cactcctctagtaaaagctcctcccaagcccacaacctacgcctcctcctccacccctcaccatccttctccattcccaaagagaacaaagaggccaccg 406  Q
    |||||||||||||||||||||||||| ||||| |  ||||||||||  ||||||||||| || |||| |||||| |||||||||||||||||||| || |    
T  21549095 cactcctctagtaaaagctcctcccacgcccaaagtctacgcctccaactccacccctccccctcctgctccatacccaaagagaacaaagaggctactg 21549194  T
Q  407 taatagttttattctctgctaagtcaaacaagcggggaatccgcactcaaagcggagtacctccaatccacctatg 482  Q
    |||| ||||| |||||||||||||||||||||||||||| |||||| |||| ||||| |||||||| | |||||||    
T  21549195 taatggttttgttctctgctaagtcaaacaagcggggaaaccgcacacaaaacggagaacctccaagctacctatg 21549270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 7 - 445
Target Start/End: Original strand, 24378724 - 24379162
Alignment:
Q  7 gtctccacgtgaccacaaccagaaacacataagatatcatccgcggggacaacaccacgaatcgccagattagctttcgttggtaatcgatctcggataa 106  Q
    |||||||| ||||| |||||||| ||||| ||||||||||  ||||  | |||||||||| ||||||| || ||||||||||||||||||||||| ||||    
T  24378724 gtctccacatgaccgcaaccagacacacaaaagatatcatttgcggaaataacaccacgagtcgccaggtttgctttcgttggtaatcgatctcgaataa 24378823  T
Q  107 gccgccacgcaaaaactgaaaccttcaaatgaacctgaggatgccacactaactcaaagggtaatcccatctgagaatcatccccaatcgtcaacaaatc 206  Q
    ||||||||||||||||||||||||| ||  |||||||||||| |||||| |||| ||| ||||||||||||| |||||| ||||| ||||||||||||||    
T  24378824 gccgccacgcaaaaactgaaacctttaagggaacctgaggataccacaccaacttaaaaggtaatcccatctcagaatcctcccctatcgtcaacaaatc 24378923  T
Q  207 ataggcacctctcacagagtacccctctgcagtatctggaagtcactcccaaaaatctgaaacattaggaaccaaagagatatcaaatagtaacgcccta 306  Q
    |||||||||||||||||| || |||| ||||||||| ||||| |||||||||  |||||||| ||||||||||| |||||||||||||||||||||||||    
T  24378924 ataggcacctctcacagaatatccctatgcagtatccggaagccactcccaagtatctgaaatattaggaaccagagagatatcaaatagtaacgcccta 24379023  T
Q  307 cactcctctagtaaaagctcctcccaagcccacaacctacgcctcctcctccacccctcaccatccttctccattcccaaagagaacaaagaggccaccg 406  Q
    |||||||||| ||||||||||||||| ||||| |  ||||||||||  ||||||||||| || |||| |||| | |||||||||||||||||||| ||||    
T  24379024 cactcctctaataaaagctcctcccacgcccatagtctacgcctccatctccacccctccccctcctgctccgtacccaaagagaacaaagaggctaccg 24379123  T
Q  407 taatagttttattctctgctaagtcaaacaagcggggaa 445  Q
    |||| ||||| || |||||||||||||||||||||||||    
T  24379124 taatggttttgttttctgctaagtcaaacaagcggggaa 24379162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 7 - 482
Target Start/End: Original strand, 9565314 - 9565789
Alignment:
Q  7 gtctccacgtgaccacaaccagaaacacataagatatcatccgcggggacaacaccacgaatcgccagattagctttcgttggtaatcgatctcggataa 106  Q
    |||||||||||||| || ||| | ||||| || |||||||||||||| | |||||||| ||| ||||||||||||||||||||||  ||||| || ||||    
T  9565314 gtctccacgtgaccgcacccacatacacaaaatatatcatccgcgggaataacaccacaaatagccagattagctttcgttggtagacgatcccgaataa 9565413  T
Q  107 gccgccacgcaaaaactgaaaccttcaaatgaacctgaggatgccacactaactcaaagggtaatcccatctgagaatcatccccaatcgtcaacaaatc 206  Q
    |||||||||||||||  || ||||||||| ||||||||||||||||||| |||||||| ||||||||||  ||||||||||| ||  | || ||||||||    
T  9565414 gccgccacgcaaaaatcgataccttcaaaggaacctgaggatgccacaccaactcaaaaggtaatcccaattgagaatcatcaccgttagttaacaaatc 9565513  T
Q  207 ataggcacctctcacagagtacccctctgcagtatctggaagtcactcccaaaaatctgaaacattaggaaccaaagagatatcaaatagtaacgcccta 306  Q
    ||||||||||||||| ||||| |||||||||||||| || || |||||| | | |||| |||||||||||||||||||||||||||| ||||||| | ||    
T  9565514 ataggcacctctcacggagtatccctctgcagtatcaggcagccactcctatatatctaaaacattaggaaccaaagagatatcaaaaagtaacgtctta 9565613  T
Q  307 cactcctctagtaaaagctcctcccaagcccacaacctacgcctcctcctccacccctcaccatccttctccattcccaaagagaacaaagaggccaccg 406  Q
    ||||||||||| |||  ||||||||| |||||||||||||||||||  ||||||||||| ||| ||| |||||  ||||||||||||||||| |||||||    
T  9565614 cactcctctagcaaagcctcctcccacgcccacaacctacgcctccaactccacccctccccaccctgctccagacccaaagagaacaaagaagccaccg 9565713  T
Q  407 taatagttttattctctgctaagtcaaacaagcggggaatccgcactcaaagcggagtacctccaatccacctatg 482  Q
    ||||  |||| ||||| ||||||||||| || || | ||  ||||| |||||||| | ||| ||||||||||||||    
T  9565714 taatgattttgttctcagctaagtcaaataaccgagaaaatcgcacacaaagcggggaaccaccaatccacctatg 9565789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 7 - 254
Target Start/End: Original strand, 26010819 - 26011066
Alignment:
Q  7 gtctccacgtgaccacaaccagaaacacataagatatcatccgcggggacaacaccacgaatcgccagattagctttcgttggtaatcgatctcggataa 106  Q
    |||||||| ||||| |||||||| ||||| ||||||||||  ||||  | |||||||||| ||||||| ||||||||||||||||| |||||| | ||||    
T  26010819 gtctccacatgaccgcaaccagacacacaaaagatatcatttgcggaaataacaccacgagtcgccaggttagctttcgttggtaaacgatcttgaataa 26010918  T
Q  107 gccgccacgcaaaaactgaaaccttcaaatgaacctgaggatgccacactaactcaaagggtaatcccatctgagaatcatccccaatcgtcaacaaatc 206  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||||||    
T  26010919 gccgccgcgcaaaaactgaaaccttcaaaggaacctgaggatgccacaccaactcaaaaggtaatcccatctgagaatcctcccctatcgtcaacaaatc 26011018  T
Q  207 ataggcacctctcacagagtacccctctgcagtatctggaagtcactc 254  Q
    ||| ||| |||||||||| || |||||||||||||| |||||||||||    
T  26011019 atatgcatctctcacagaatatccctctgcagtatccggaagtcactc 26011066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 8 - 482
Target Start/End: Complemental strand, 23066242 - 23065764
Alignment:
Q  8 tctccacgtgaccacaaccagaaacacataagatatcatccgcggggacaacaccacgaatcgccagattagctttcgttggtaatcgatctcggataag 107  Q
    |||||||| ||||||| || |||||||| ||||||||||  ||  | | |||| ||||||| ||||| ||||||||||| |||| | |||| || | |||    
T  23066242 tctccacgcgaccacaccctgaaacacaaaagatatcatatgcaagaataacatcacgaatagccaggttagctttcgtaggtagttgatcccgaacaag 23066143  T
Q  108 ccgccacgcaaaaactgaaaccttcaaatgaacctgaggatgccacactaactcaaagggtaatcccatctgagaatcatccccaatcgtcaacaaatca 207  Q
    || ||| ||||||||||| ||||||||| |||| |||  |||||| || |||||||| ||||  || ||||||||| |||| |||   |  ||||||||     
T  23066142 cctccaagcaaaaactgagaccttcaaaggaacttgattatgccaaaccaactcaaaaggtatgcctatctgagaaacatcaccatcagataacaaatcg 23066043  T
Q  208 taggcacctctcacagagtacccctctgcagtatctggaagtcactcccaaaaatctgaaaca---ttaggaaccaaagagatatcaaatagtaacgccc 304  Q
    ||| |||||||||| |||||||||   |||||||| || || |||||||| | ||||||||||   ||||||||||||||||||||||||||||  |||     
T  23066042 tagccacctctcacggagtaccccaaagcagtatcaggtagccactcccatatatctgaaacaatattaggaaccaaagagatatcaaatagtagagcct 23065943  T
Q  305 tacactcctctagtaaaagctcctcccaagcccacaacctacgcctcctcctcca-cccctcaccatccttctccattcccaaagagaacaaagaggcca 403  Q
    ||||||||||||| |||  ||||||||| |||||||||| ||||| ||  ||||| |||||| ||| ||| |||||  ||||||||||||||||  ||||    
T  23065942 tacactcctctagcaaatcctcctcccacgcccacaaccgacgccgccaactccaccccctccccaccctgctccagacccaaagagaacaaagtagcca 23065843  T
Q  404 ccgtaatagttttattctctgctaagtcaaacaagcggggaatccgcactcaaagcggagtacctccaatccacctatg 482  Q
    |  |||| ||||| |||||    ||||||||||| || ||||  ||||| |  ||||||| ||| ||||||||||||||    
T  23065842 ctataatggttttgttctcaaacaagtcaaacaaacgaggaaatcgcacactgagcggagaaccaccaatccacctatg 23065764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 261 - 347
Target Start/End: Original strand, 33804982 - 33805068
Alignment:
Q  261 atctgaaacattaggaaccaaagagatatcaaatagtaacgccctacactcctctagtaaaagctcctcccaagcccacaacctacg 347  Q
    ||||||||||||||| | |||||| | |||||  ||||| ||||||  |||||||| ||||  ||||||||||||||||||||||||    
T  33804982 atctgaaacattaggcaacaaagaaacatcaagcagtaaagccctaagctcctctaataaattctcctcccaagcccacaacctacg 33805068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 365
Target Start/End: Original strand, 13085782 - 13085844
Alignment:
Q  303 cctacactcctctagtaaaagctcctcccaagcccacaacctacgcctcctcctccacccctc 365  Q
    ||||||||||||||| | || ||||||||| ||||||||||| |||||||  |||||||||||    
T  13085782 cctacactcctctaggacaatctcctcccacgcccacaacctccgcctccaactccacccctc 13085844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 262 - 362
Target Start/End: Original strand, 4474900 - 4475000
Alignment:
Q  262 tctgaaacattaggaaccaaagagatatcaaatagtaacgccctacactcctctagtaaaagctcctcccaagcccacaacctacgcctcctcctccacc 361  Q
    |||||||||||||| | |||||| | || ||  | ||| | |||| ||||||||| ||||  ||||||||| |||||||||||||| |||| ||||||||    
T  4474900 tctgaaacattaggcagcaaagaaacattaagcaataaagtcctaaactcctctaataaattctcctcccacgcccacaacctacgtctccacctccacc 4474999  T
Q  362 c 362  Q
    |    
T  4475000 c 4475000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 333
Target Start/End: Original strand, 11468787 - 11468854
Alignment:
Q  266 aaacattaggaaccaaagagatatcaaatagtaacgccctacactcctctagtaaaagctcctcccaa 333  Q
    ||||||||||||||| ||| | |||||| || || ||||||||||| |||||||||  ||||||||||    
T  11468787 aaacattaggaaccagagaaacatcaaacagaaaagccctacactcgtctagtaaattctcctcccaa 11468854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 25317880 - 25317937
Alignment:
Q  86 ttggtaatcgatctcggataagccgccacgcaaaaactgaaaccttcaaatgaacctg 143  Q
    ||||||| ||||||||||| |||| |||||||||||| || ||||||||  |||||||    
T  25317880 ttggtaaacgatctcggatgagcctccacgcaaaaacggacaccttcaagggaacctg 25317937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 26205374 - 26205431
Alignment:
Q  86 ttggtaatcgatctcggataagccgccacgcaaaaactgaaaccttcaaatgaacctg 143  Q
    ||||||| ||||||||||| |||| |||||||||||| || ||||||||  |||||||    
T  26205374 ttggtaaacgatctcggatgagcctccacgcaaaaacggacaccttcaagggaacctg 26205431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 317
Target Start/End: Original strand, 25318055 - 25318111
Alignment:
Q  261 atctgaaacattaggaaccaaagagatatcaaatagtaacgccctacactcctctag 317  Q
    ||||||||||||||||  |||||| | |||||  ||||| |||||||||||||||||    
T  25318055 atctgaaacattaggattcaaagaaacatcaagaagtaaagccctacactcctctag 25318111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 317
Target Start/End: Original strand, 26205549 - 26205605
Alignment:
Q  261 atctgaaacattaggaaccaaagagatatcaaatagtaacgccctacactcctctag 317  Q
    ||||||||||||||||  |||||| | |||||  ||||| |||||||||||||||||    
T  26205549 atctgaaacattaggattcaaagaaacatcaagaagtaaagccctacactcctctag 26205605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 7 - 482
Target Start/End: Original strand, 26693874 - 26694350
Alignment:
Q  7 gtctccacgtgaccacaaccagaaacacataagatatcatccgcggggacaacaccacgaatcgccagattagctttcgttggtaatcgatctcggataa 106  Q
    |||||||| ||||| |||||||| ||||| ||||||||||  ||||  | |||||||||| ||||||| || ||||||||||||||||||||||| ||||    
T  26693874 gtctccacatgaccgcaaccagacacacaaaagatatcatttgcggaaataacaccacgagtcgccaggtttgctttcgttggtaatcgatctcgaataa 26693973  T
Q  107 gccgccacgcaaaaactgaaaccttcaaatgaacctgaggatgccacactaactcaaag-ggtaatcccatctgagaatcatccccaatcgtcaacaaat 205  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||||| ||||||||  ||||||||||||| |||||| ||||| |||||||||||||    
T  26693974 gccgccacgcaaaaacagaaaccttcaacggaacctgaggatgccacaccaactcaaaaaggtaatcccatctaagaatcctcccctatcgtcaacaaat 26694073  T
Q  206 cataggcacctctcacagagtacccctctgcagtatctggaagtcactcccaaaaatctgaaacattaggaaccaaagagatatcaaatagtaacgccct 305  Q
    ||||||||||||||||||| || | |||||||||||| ||||| |||||||||  |||||||||||||||||||| ||||||||||||||||||||||||    
T  26694074 cataggcacctctcacagaatatctctctgcagtatccggaagccactcccaagtatctgaaacattaggaaccagagagatatcaaatagtaacgccct 26694173  T
Q  306 acactcctctagtaaaagctcctcccaagcccacaacctacgcctcctcctccacccctcaccatccttctccattcccaaagagaacaaagaggccacc 405  Q
    |||||||||||| | |||||||||||| ||||| |  ||||||||||  ||||||||||| || |||| |||| | |||||| ||||||||||||| |||    
T  26694174 acactcctctagaagaagctcctcccacgcccatagtctacgcctccatctccacccctccccctcctgctccgtacccaaatagaacaaagaggctacc 26694273  T
Q  406 gtaatagttttattctctgctaagtcaaacaagcggggaatccgcactcaaagcggagtacctccaatccacctatg 482  Q
    ||||| ||||| |||||||||||||||||||| ||||| | |||||| |||| ||||| |||| ||| |||||||||    
T  26694274 gtaatggttttgttctctgctaagtcaaacaatcgggggaaccgcacacaaaacggagaaccttcaagccacctatg 26694350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 7 - 286
Target Start/End: Complemental strand, 46639183 - 46638904
Alignment:
Q  7 gtctccacgtgaccacaaccagaaacacataagatatcatccgcggggacaacaccacgaatcgccagattagctttcgttggtaatcgatctcggataa 106  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  46639183 gtctccacgtgaccacaaccagaaacacagaagatatcatccgcggggacaacaccacgaatcgccagattagctttcgtaggtaatcgatcccggataa 46639084  T
Q  107 gccgccacgcaaaaactgaaaccttcaaatgaacctgaggatgccacactaactcaaagggtaatcccatctgagaatcatccccaatcgtcaacaaatc 206  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||| ||||| ||||| |||||||||||||||| ||||||||||||    
T  46639083 gccgccacgcaaaaactgaaaccttcaaaggaacctgaggatgccacaccaactgaaaaggtaaacccatatgagaatcatccccaagcgtcaacaaatc 46638984  T
Q  207 ataggcacctctcacagagtacccctctgcagtatctggaagtcactcccaaaaatctgaaacattaggaaccaaagaga 286  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||| ||||||||    
T  46638983 ataggcacctctcacagagtacccctctgcattatctggaagccactcccaaacatctgaaacattaggaatcaaagaga 46638904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 254 - 365
Target Start/End: Complemental strand, 42953440 - 42953329
Alignment:
Q  254 cccaaaaatctgaaacattaggaaccaaagagatatcaaatagtaacgccctacactcctctagtaaaagctcctcccaagcccacaacctacgcctcct 353  Q
    ||||| ||||| ||| | |||||| |||||| | |||||  ||||| |||||||||||||||| ||||  ||| ||||| ||||||||||| |||||||     
T  42953440 cccaagaatctaaaataataggaaacaaagaaacatcaagcagtaaggccctacactcctctaataaactctcttcccacgcccacaacctccgcctcca 42953341  T
Q  354 cctccacccctc 365  Q
     |||||||||||    
T  42953340 actccacccctc 42953329  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 199 - 316
Target Start/End: Original strand, 53809980 - 53810097
Alignment:
Q  199 aacaaatcataggcacctctcacagagtacccctctgcagtatctggaagtcactcccaaaaatctgaaacattaggaaccaaagagatatcaaatagta 298  Q
    ||||||||||||||||||| |||||| || ||  | ||| | |||||||| ||  ||||   |||||||||||| ||||||||  | | |||||||||||    
T  53809980 aacaaatcataggcacctcgcacagaatatccgccagcaatgtctggaagccatacccatttatctgaaacatttggaaccaacaaaacatcaaatagta 53810079  T
Q  299 acgccctacactcctcta 316  Q
    ||| ||||||||||||||    
T  53810080 acgtcctacactcctcta 53810097  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 344
Target Start/End: Complemental strand, 4640609 - 4640535
Alignment:
Q  270 attaggaaccaaagagatatcaaatagtaacgccctacactcctctagtaaaagctcctcccaagcccacaacct 344  Q
    |||||||| |||||||| |||||||||||  | ||||||||||||||  ||   |||||||||||||||||||||    
T  4640609 attaggaaacaaagagacatcaaatagtagagtcctacactcctctaacaagtcctcctcccaagcccacaacct 4640535  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 7663357 - 7663305
Alignment:
Q  82 ttcgttggtaatcgatctcggataagccgccacgcaaaaactgaaaccttcaa 134  Q
    ||||||||||| ||||||||||| || | ||||||||||||||| ||||||||    
T  7663357 ttcgttggtaaacgatctcggatgagtctccacgcaaaaactgataccttcaa 7663305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 352
Target Start/End: Complemental strand, 29553696 - 29553588
Alignment:
Q  244 ggaagtcactcccaaaaatctgaaacattaggaaccaaagagatatcaaatagtaacgccctacactcctctagtaaaagctcctcccaagcccacaacc 343  Q
    ||||||||| |||||| |||||||||||||  |  |||||| | |||||| ||||| | ||||||||||||||  ||   ||||||||| |||||||| |    
T  29553696 ggaagtcacacccaaagatctgaaacattaacattcaaagaaacatcaaacagtaaagtcctacactcctctaacaactcctcctcccacgcccacaatc 29553597  T
Q  344 tacgcctcc 352  Q
    | |||||||    
T  29553596 tccgcctcc 29553588  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 50452026 - 50452093
Alignment:
Q  7 gtctccacgtgaccacaaccagaaacacataagatatcatccgcggggacaacaccacgaatcgccag 74  Q
    |||||||||||||| || ||||||||||| || ||||||||||  || | |||||||||||| |||||    
T  50452026 gtctccacgtgaccgcacccagaaacacaaaatatatcatccgtaggaataacaccacgaatagccag 50452093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 136; Significance: 9e-71; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 7 - 482
Target Start/End: Complemental strand, 34853834 - 34853359
Alignment:
Q  7 gtctccacgtgaccacaaccagaaacacataagatatcatccgcggggacaacaccacgaatcgccagattagctttcgttggtaatcgatctcggataa 106  Q
    |||||||||||| | || || |||||||| || || |||| ||| |  | |||||||||||| | ||| |||||||||||||||||| ||||  | || |    
T  34853834 gtctccacgtgatcgcaccctgaaacacaaaatatgtcatacgcagaaataacaccacgaatagtcaggttagctttcgttggtaattgatcctgaatga 34853735  T
Q  107 gccgccacgcaaaaactgaaaccttcaaatgaacctgaggatgccacactaactcaaagggtaatcccatctgagaatcatccccaatcgtcaacaaatc 206  Q
    |||||||||||||||| || ||||||||| || ||||  |||||||||| || || || |||   |||||||||||| |||| ||| | || ||||| ||    
T  34853734 gccgccacgcaaaaaccgagaccttcaaaggagcctgttgatgccacaccaagtcgaaaggtgtgcccatctgagaagcatcaccatttgttaacaagtc 34853635  T
Q  207 ataggcacctctcacagagtacccctctgcagtatctggaagtcactcccaaaaatctgaaacattaggaaccaaagagatatcaaatagtaacgcccta 306  Q
    |||||||||| |||| ||||||||||| |||||||| ||||||| ||||||   ||||||||||||| |||||||||||| |||||||||||||||||||    
T  34853634 ataggcacctatcacggagtacccctcagcagtatcaggaagtcgctcccatttatctgaaacattatgaaccaaagagacatcaaatagtaacgcccta 34853535  T
Q  307 cactcctctagtaaaagctcctcccaagcccacaacctacgcctcctcctccacccctcaccatccttctccattcccaaagagaacaaagaggccaccg 406  Q
    ||||||||||| |||  | | ||||| ||||||| |||| | | ||  ||||||||| | ||| ||| |||||  ||||  ||||||||||  ||||| |    
T  34853534 cactcctctagcaaagtcccatcccacgcccacagcctatgacaccatctccaccccgccccaccctgctccagacccatggagaacaaagtagccactg 34853435  T
Q  407 taatagttttattctctgctaagtcaaacaagcggggaatccgcactcaaagcggagtacctccaatccacctatg 482  Q
    |||| ||||| ||||| | ||||||||||||||| ||||  ||||| | |||||| | ||| |||||||| |||||    
T  34853434 taatggttttgttctcagataagtcaaacaagcgaggaaatcgcacactaagcggggaaccaccaatccatctatg 34853359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 262 - 362
Target Start/End: Complemental strand, 16873430 - 16873330
Alignment:
Q  262 tctgaaacattaggaaccaaagagatatcaaatagtaacgccctacactcctctagtaaaagctcctcccaagcccacaacctacgcctcctcctccacc 361  Q
    |||||||||||||| | |||||| | |||||  ||||| ||||||  |||||||| ||||| |||||||||||||||||||||||| |||| ||||||||    
T  16873430 tctgaaacattaggcaacaaagaaacatcaagcagtaaagccctaagctcctctaataaaatctcctcccaagcccacaacctacgtctccacctccacc 16873331  T
Q  362 c 362  Q
    |    
T  16873330 c 16873330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 255 - 369
Target Start/End: Original strand, 39430473 - 39430587
Alignment:
Q  255 ccaaaaatctgaaacattaggaaccaaagagatatcaaatagtaacgccctacactcctctagtaaaagctcctcccaagcccacaacctacgcctcctc 354  Q
    |||| ||||||||| || || || || ||| ||||||| |||||| | ||||||||||||||  | || |||||||||  |||||||||| |||||||      
T  39430473 ccaagaatctgaaatatcagtaaacagagaaatatcaagtagtaaagtcctacactcctctaagacaatctcctcccacacccacaacctccgcctccaa 39430572  T
Q  355 ctccacccctcacca 369  Q
    |||||||||||||||    
T  39430573 ctccacccctcacca 39430587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 365
Target Start/End: Original strand, 20795911 - 20795973
Alignment:
Q  303 cctacactcctctagtaaaagctcctcccaagcccacaacctacgcctcctcctccacccctc 365  Q
    ||||||||||||||  | || ||||||||| ||||||||||| |||||||  |||||||||||    
T  20795911 cctacactcctctaagacaatctcctcccacgcccacaacctccgcctccaactccacccctc 20795973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 32353412 - 32353354
Alignment:
Q  85 gttggtaatcgatctcggataagccgccacgcaaaaactgaaaccttcaaatgaacctg 143  Q
    |||||||| ||||| ||||| |||| |||||||||||| |||||||||||  |||||||    
T  32353412 gttggtaaacgatcacggatgagcctccacgcaaaaacggaaaccttcaagggaacctg 32353354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 365
Target Start/End: Complemental strand, 49264861 - 49264799
Alignment:
Q  303 cctacactcctctagtaaaagctcctcccaagcccacaacctacgcctcctcctccacccctc 365  Q
    ||||||||||||||  | || ||||||||| ||||||||||| |||||||  |||||||||||    
T  49264861 cctacactcctctaagacaatctcctcccacgcccacaaccttcgcctccaactccacccctc 49264799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 261 - 482
Target Start/End: Complemental strand, 15589 - 15368
Alignment:
Q  261 atctgaaacattaggaaccaaagagatatcaaatagtaacgccctacactcctctagtaaaagctcctcccaagcccacaacctacgcctcctcctccac 360  Q
    ||||||||| || ||||||||  | | |||||||||||| ||||||||||||||||  | |  ||||||||| |||||||| || || | || |||||||    
T  15589 atctgaaacgtttggaaccaacaaaacatcaaatagtaaagccctacactcctctaacatatcctcctcccacgcccacaatctgcgacgccacctccac 15490  T
Q  361 ccctcaccatccttctccattcccaaagagaacaaagaggccaccgtaatagttttattctctgctaagtcaaacaagcggggaatccgcactcaaagcg 460  Q
    ||||| || | |  | |||  ||||  ||||| ||    ||||||||||| ||||| |||||||| ||||||||||| ||  ||| |||||| | ||||     
T  15489 ccctccccttgccgcgccagacccagcgagaaaaagttagccaccgtaatcgttttgttctctgccaagtcaaacaatcgacgaaaccgcacactaagca 15390  T
Q  461 gagtacctccaatccacctatg 482  Q
    |  |||| ||||||||||||||    
T  15389 ggataccaccaatccacctatg 15368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 82 - 134
Target Start/End: Original strand, 7697 - 7749
Alignment:
Q  82 ttcgttggtaatcgatctcggataagccgccacgcaaaaactgaaaccttcaa 134  Q
    ||||||||||| ||||||||||| || | ||||||||||||||| ||||||||    
T  7697 ttcgttggtaaacgatctcggatgagtctccacgcaaaaactgataccttcaa 7749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 262 - 362
Target Start/End: Original strand, 17348 - 17448
Alignment:
Q  262 tctgaaacattaggaaccaaagagatatcaaatagtaacgccctacactcctctagtaaaagctcctcccaagcccacaacctacgcctcctcctccacc 361  Q
    |||||||||||||| | |||||| | ||| |  ||||| ||||||  |||||||| ||||  |||||||| ||||||||||||||| ||||  |||||||    
T  17348 tctgaaacattaggcaacaaagaaacatccagcagtaaagccctaagctcctctaataaattctcctccccagcccacaacctacgtctccatctccacc 17447  T
Q  362 c 362  Q
    |    
T  17448 c 17448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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