View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18642_low_6 (Length: 453)
Name: NF18642_low_6
Description: NF18642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18642_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 7 - 437
Target Start/End: Original strand, 44945482 - 44945933
Alignment:
| Q |
7 |
acatcatcactctcctttctaaatgagtcactatgaagatcccttgtgattctagttgttgtatccaaaaagtacaaactgaaagatgtcaaacagcaac |
106 |
Q |
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| T |
44945482 |
acatcatcactctcctttctgaatgagtcactatgaagatcccttgtgattctagttgttgtatccaaaaagtacaaactgaatgatgtcaaacagcaac |
44945581 |
T |
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| Q |
107 |
aagtaaacattggtataggcccataaatccataggaagagaggaaatgataagtaaaatgctcgcaagccaagggaccaagagtgactagcacgattcaa |
206 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||| |||||||| |
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| T |
44945582 |
aagcaaacattggtataggcccataaatccataggaagagaggaaatgataagtaaaatgctcgcaatccaagggaccaggagtaactagcgcgattcaa |
44945681 |
T |
|
| Q |
207 |
tgtcttagcaatatattccatatatgcctttttatctctgagtgttggcgcgttgattaaaaagctgacatgacaatagcatcttatagactgaacattg |
306 |
Q |
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| T |
44945682 |
tgtcttagcaatatattccatatatgcctttttatctctgagtgttggcgcgttgattaaaaagctgacatgacaatagcatcttatagactgaacattg |
44945781 |
T |
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| Q |
307 |
cataaaaatgcaacaaggaagcagatggtaatcgaaatgtgtttgattgaagaattactttgaagtatggaagat---------------------gaac |
385 |
Q |
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| T |
44945782 |
cataaaaatgcaacaaggaagcagatggtaatcgaaatgtgtttgattgaagaagtactttgaagtatggaagatgatgtatcatcagaactccacgaac |
44945881 |
T |
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| Q |
386 |
tgctagcaaaaattccaataagtgaacttagtgtgatagctgttgtagaaag |
437 |
Q |
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| T |
44945882 |
tgctagcaaaaattccaataagtgaacttagtgtgatagctgttgtagaaag |
44945933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 9 - 433
Target Start/End: Original strand, 44943830 - 44944272
Alignment:
| Q |
9 |
atcatcactctcctttctaaatgagtcactatgaagatcccttgtgattctagttgttgtatccaaaaagtacaaactgaaagatgtcaaacagcaacaa |
108 |
Q |
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| T |
44943830 |
atcatcactctcctttctgaatgagtcactatgaagatcccttgtgattctagttgttgtatccaaaaagtacaaactgaatgatgtcaaacagcaacaa |
44943929 |
T |
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| Q |
109 |
gtaaacattggtataggcccataaatccataggaagagaggaaatgataagtaaaatgctcgcaagccaagggaccaagagtgactagcacgattcaatg |
208 |
Q |
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| T |
44943930 |
gcaaacattggtataggcccataaatccataggaagagaggaaatgataagtaaaatgctcgcaatccaagggaccaagagtgactagcacgattcaatg |
44944029 |
T |
|
| Q |
209 |
tcttagcaatatattccatatatgcctttttatctctgagtgttggcgcgttgattaaaaagctgacatgacaatagcatcttatagactgaacattgca |
308 |
Q |
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| T |
44944030 |
tcttagcaatatattccatatatgcctttttatctcggagtgtaggtgcggtgattaaaaaactgacatgacaatagcaccttatagactgaacattgca |
44944129 |
T |
|
| Q |
309 |
taaaaatgcaacaaggaagcagatggtaatcgaaatgtgtttgattgaagaattactttgaagtatggaag------------------atgaactgcta |
390 |
Q |
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| T |
44944130 |
taaaaatgcaacaaggaagcaaatggtaatcgaaatacgtttgattgaagaagtactttgaagtatggaagatgtatcatcagaactccatgaactgcta |
44944229 |
T |
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| Q |
391 |
gcaaaaattccaataagtgaacttagtgtgatagctgttgtag |
433 |
Q |
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| T |
44944230 |
gcaaaaattccaataagtgaacttaatgtgattgctgttgtag |
44944272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 40 - 329
Target Start/End: Original strand, 44940692 - 44940981
Alignment:
| Q |
40 |
tgaagatcccttgtgattctagttgttgtatccaaaaagtacaaactgaaagatgtcaaacagcaacaagtaaacattggtataggcccataaatccata |
139 |
Q |
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|||||||||||||||||| ||| ||||||||||| ||||||||| | || ||||| || || ||||| ||||||| ||||| |||||||||||||||| |
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| T |
44940692 |
tgaagatcccttgtgatttgagtggttgtatccaagaagtacaaaataaatgatgtgaagcaagaacaaataaacatgggtatgggcccataaatccata |
44940791 |
T |
|
| Q |
140 |
ggaagagaggaaatgataagtaaaatgctcgcaagccaagggaccaagagtgactagcacgattcaatgtcttagcaatatattccatatatgccttttt |
239 |
Q |
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||| || |||| ||| ||| || || | ||| ||||| |||||||| | ||| |||| |||||||| || |||| |||||| ||| | ||||||| |
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| T |
44940792 |
ggacaagtggaattgacgtgtagaaagccctcaaaccaagagaccaagaataacttccacggttcaatgtttttgcaacatattcgataaaatccttttt |
44940891 |
T |
|
| Q |
240 |
atctctgagtgttggcgcgttgattaaaaagctgacatgacaatagcatcttatagactgaacattgcataaaaatgcaacaaggaagca |
329 |
Q |
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| T |
44940892 |
gccattgagtgcaggtgtattgattaagaaactcacatgtgcatagtatcttatagattgcatattacatagaaatgcaacaaggaagca |
44940981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 433
Target Start/End: Original strand, 44941059 - 44941106
Alignment:
| Q |
386 |
tgctagcaaaaattccaataagtgaacttagtgtgatagctgttgtag |
433 |
Q |
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|||| ||||||| |||||| ||||||||||||||||| |||||||||| |
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| T |
44941059 |
tgcttgcaaaaactccaattagtgaacttagtgtgattgctgttgtag |
44941106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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