View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18642_low_7 (Length: 447)
Name: NF18642_low_7
Description: NF18642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18642_low_7 |
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| [»] chr8 (3 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 383; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 25 - 447
Target Start/End: Complemental strand, 26495320 - 26494898
Alignment:
| Q |
25 |
cacagatatacacatatatttacaccatagttgattgatgttgtaaactaaccttacattgctatatttgtatcattgctctatggcatcaatgtatcat |
124 |
Q |
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|||||| | ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26495320 |
cacagacacacacatatatttacaccatggttgattgatgttgtaaactaaccatacattgctatatttgtatcattgctctatggcatcaatgtgtcat |
26495221 |
T |
|
| Q |
125 |
ttatatctaaatgtgtttgcaccattgttttatggttgatatactttttgttttactttgcaatggtgcacaatcatgatcatgtcctataaaatgtctc |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
26495220 |
ttatatctaaatgtgtttgcaccattgttttatggttgatatactttttgttttactttgcaatggtgcacaatcctgatcatgtcctataaaatgtctc |
26495121 |
T |
|
| Q |
225 |
caattgttgaatctagttcctgagagaaatttgattttctagtggatatttcatcaccattgtaaattcttgtttttctgtcaaatcaacattacttcct |
324 |
Q |
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||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
26495120 |
caattgttgaatctaattcctgagagaaatttgagcttctagtggatatttcatcaccattgtaaattcctgtttttctgtcaaatcaacattacttcct |
26495021 |
T |
|
| Q |
325 |
ggtaatgaagtcttccactcaaagttcaaaaccaaattagcaacaaagtattctaaatggagcattgccaatttataggcaggacaaatcctcctccctg |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26495020 |
ggtaatgaagtcttccactcaaagttcaaaaccaaattagcaacaaagtattctaaatggagcattgccaatttataggcaggacaaatcctcctccctg |
26494921 |
T |
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| Q |
425 |
ctccaaacggcatcatctttatc |
447 |
Q |
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| T |
26494920 |
ctccaaacggcatcatctttatc |
26494898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 267 - 447
Target Start/End: Complemental strand, 26507105 - 26506925
Alignment:
| Q |
267 |
tggatatttcatcaccattgtaaattcttgtttttctgtcaaatcaacattacttcctggtaatgaagtcttccactcaaagttcaaaaccaaattagca |
366 |
Q |
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|||||||||||||||||| |||||||| |||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||| |||| ||||| | |
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| T |
26507105 |
tggatatttcatcaccatagtaaattcctgtttttctgacaaatcaacattactttctggtaatgaagtcttccattcaaagttccaaactaaatttgtc |
26507006 |
T |
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| Q |
367 |
acaaagtattctaaatggagcattgccaatttataggcaggacaaatcctcctccctgctccaaacggcatcatctttatc |
447 |
Q |
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| T |
26507005 |
acaaagtactctacatggagcattgccaagttataggcaggacaaatcctccttcctgctccaaatggcatcatctttatc |
26506925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 355 - 447
Target Start/End: Complemental strand, 41127405 - 41127313
Alignment:
| Q |
355 |
accaaattagcaacaaagtattctaaatggagcattgccaatttataggcaggacaaatcctcctccctgctccaaacggcatcatctttatc |
447 |
Q |
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| T |
41127405 |
accaaattagccacaaagtattccaaatggagcaaagctaaattatatccaggacaaattctcctcccaactccaaacggcatcatctttatc |
41127313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 337 - 447
Target Start/End: Original strand, 15176287 - 15176397
Alignment:
| Q |
337 |
ttccactcaaagttcaaaaccaaattagcaacaaagtattctaaatggagcattgccaatttataggcaggacaaatcctcctccctgctccaaacggca |
436 |
Q |
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||||||||||| |||||||| ||||| |||||||||||||| || || | || ||| || |||| ||||||| || ||||||||||||||||| |||| |
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| T |
15176287 |
ttccactcaaaattcaaaacaaaattggcaacaaagtattccaagtgcaacaatgctaaaccatagccaggacacattctcctccctgctccaaatggca |
15176386 |
T |
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| Q |
437 |
tcatctttatc |
447 |
Q |
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||||||||||| |
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| T |
15176387 |
tcatctttatc |
15176397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 336 - 447
Target Start/End: Complemental strand, 2331112 - 2331001
Alignment:
| Q |
336 |
cttccactcaaagttcaaaaccaaattagcaacaaagtattctaaatggagcattgccaatttataggcaggacaaatcctcctccctgctccaaacggc |
435 |
Q |
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|||||| || || ||| ||||||||||||| ||||| ||||| ||||| |||| || || ||||| |||||||||| |||||||| |||||||| ||| |
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| T |
2331112 |
cttccaatcgaaattccaaaccaaattagccacaaaatattccaaatgaagcaaagctaaattatatccaggacaaattctcctcccagctccaaatggc |
2331013 |
T |
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| Q |
436 |
atcatctttatc |
447 |
Q |
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|||||||||||| |
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| T |
2331012 |
atcatctttatc |
2331001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 447
Target Start/End: Complemental strand, 2303842 - 2303731
Alignment:
| Q |
336 |
cttccactcaaagttcaaaaccaaattagcaacaaagtattctaaatggagcattgccaatttataggcaggacaaatcctcctccctgctccaaacggc |
435 |
Q |
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|||||| || || ||| ||||||||||||| ||||| |||||||||||||||| || || ||| ||||||||||| ||||| | ||| |||||||| |
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| T |
2303842 |
cttccaatcgaaattccaaaccaaattagccacaaaatattctaaatggagcaaagctaaattaagtgcaggacaaattctcctttcagcttcaaacggc |
2303743 |
T |
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| Q |
436 |
atcatctttatc |
447 |
Q |
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|||||||||||| |
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| T |
2303742 |
atcatctttatc |
2303731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 443
Target Start/End: Complemental strand, 2327397 - 2327290
Alignment:
| Q |
336 |
cttccactcaaagttcaaaaccaaattagcaacaaagtattctaaatggagcattgccaatttataggcaggacaaatcctcctccctgctccaaacggc |
435 |
Q |
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|||||| || || ||| ||||||||||||| ||||| ||||| |||||||| | || || ||||| | |||||||| ||||| || |||||||||||| |
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| T |
2327397 |
cttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccggacaaattctcctaccagctccaaacggc |
2327298 |
T |
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| Q |
436 |
atcatctt |
443 |
Q |
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|||||||| |
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| T |
2327297 |
atcatctt |
2327290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 447
Target Start/End: Complemental strand, 2321527 - 2321433
Alignment:
| Q |
353 |
aaaccaaattagcaacaaagtattctaaatggagcattgccaatttataggcaggacaaatcctcctccctgctccaaacggcatcatctttatc |
447 |
Q |
| |
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||||||| ||||| ||||| ||||| |||||||||| || || ||| | |||||||| ||||| || |||||||||||||||||||||||| |
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| T |
2321527 |
aaaccaagttagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattctccttccagctccaaacggcatcatctttatc |
2321433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 316
Target Start/End: Complemental strand, 2294295 - 2294246
Alignment:
| Q |
267 |
tggatatttcatcaccattgtaaattcttgtttttctgtcaaatcaacat |
316 |
Q |
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||||| |||||||||||| || ||||||||| |||| ||||||||||||| |
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| T |
2294295 |
tggatttttcatcaccatggtgaattcttgtatttccgtcaaatcaacat |
2294246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 316
Target Start/End: Complemental strand, 2310626 - 2310577
Alignment:
| Q |
267 |
tggatatttcatcaccattgtaaattcttgtttttctgtcaaatcaacat |
316 |
Q |
| |
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||||| |||||||||||| || ||||||||| |||| ||||||||||||| |
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| T |
2310626 |
tggatttttcatcaccatagtgaattcttgtatttccgtcaaatcaacat |
2310577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 443
Target Start/End: Complemental strand, 55017133 - 55017096
Alignment:
| Q |
406 |
ggacaaatcctcctccctgctccaaacggcatcatctt |
443 |
Q |
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||||||||||||||||| || ||||||||||||||||| |
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| T |
55017133 |
ggacaaatcctcctcccagcaccaaacggcatcatctt |
55017096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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