View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18642_low_8 (Length: 445)
Name: NF18642_low_8
Description: NF18642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18642_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 408; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 4 - 427
Target Start/End: Original strand, 35423631 - 35424054
Alignment:
| Q |
4 |
ggaggagcagagagtttcatggtggaatgcaatgctttaggaaagatgaagcaccgtaatcttgtcaaaatcctaacttgttgttcaagtgttgattata |
103 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
35423631 |
ggagcagcaaagagtttcatggtggaatgcaatgctttaggaaagatgaagcaccgtaatcttgtgaaaatcctaacttgctgttcaagtgttgattata |
35423730 |
T |
|
| Q |
104 |
atggtgaagattttaaggccattgtttttgagttcatgcctagtgggaatctagaaaacctgttgcatggtaacgaagatcatgagtctagaaatctgaa |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35423731 |
atggtgaagattttaaggccattgtttttgagttcatgcctagtgggaatctagaaaacctgttgcatggtaacgaagatcatgagtctagaaatctgaa |
35423830 |
T |
|
| Q |
204 |
tctcaatttcacacaaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatacagagcaagttgtagttcattgtgatgtt |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35423831 |
tctcaatttcacacaaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatacagagcaagttgtagttcattgtgatgtt |
35423930 |
T |
|
| Q |
304 |
aaaccaagcaatgttcttcttgatgatgacggtgtgacccacttaggagactttggcgtagctaggttcctccatggagctacagaatattcaagtaaaa |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35423931 |
aaaccaagcaatgttcttcttgatgatgacggtgtgacccacttaggagactttggcgtagctaggttcctccatggagctacagaatattcaagtaaaa |
35424030 |
T |
|
| Q |
404 |
atcaagttatttcctccacaatta |
427 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
35424031 |
atcaagttatttcctccacaatta |
35424054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 4 - 427
Target Start/End: Original strand, 35376372 - 35376795
Alignment:
| Q |
4 |
ggaggagcagagagtttcatggtggaatgcaatgctttaggaaagatgaagcaccgtaatcttgtcaaaatcctaacttgttgttcaagtgttgattata |
103 |
Q |
| |
|
|||| |||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35376372 |
ggagcagcaaagagtttcattgcggaatgcaatgctttaggaaagatgaagcaccgtaatcttgtcaaaatcctaacttgttgttcaagtgttgattata |
35376471 |
T |
|
| Q |
104 |
atggtgaagattttaaggccattgtttttgagttcatgcctagtgggaatctagaaaacctgttgcatggtaacgaagatcatgagtctagaaatctgaa |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35376472 |
atggtgaagattttaaggccattgtttttgagttcatgcctagtgggaatctggaaaacctgttgcatggtaacgaagatcatgagtctagaaatctgaa |
35376571 |
T |
|
| Q |
204 |
tctcaatttcacacaaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatacagagcaagttgtagttcattgtgatgtt |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35376572 |
tctcaatttcacacaaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatacagagcaagttgtagttcattgtgatgtt |
35376671 |
T |
|
| Q |
304 |
aaaccaagcaatgttcttcttgatgatgacggtgtgacccacttaggagactttggcgtagctaggttcctccatggagctacagaatattcaagtaaaa |
403 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35376672 |
aagccaagcaatgttcttcttgatgatgacggtgtggcccacttaggagactttggcttagctaggttcctccatggagctacagaatattcaagtaaaa |
35376771 |
T |
|
| Q |
404 |
atcaagttatttcctccacaatta |
427 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
35376772 |
atcaagttatttcctccacaatta |
35376795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 427
Target Start/End: Original strand, 35754792 - 35755197
Alignment:
| Q |
16 |
agtttcatggtggaatgcaatgctttaggaaagatgaagcaccgtaatcttgtcaaaatcctaacttgttgttcaagtgttgattataatggtgaagatt |
115 |
Q |
| |
|
|||||||| | |||||||||||| || ||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35754792 |
agtttcatagcggaatgcaatgcattgggaaagatgaagcaccggaatcttgtcaagattttaacttgttgttcaagtgttgattataatggtgaagatt |
35754891 |
T |
|
| Q |
116 |
ttaaggccattgtttttgagttcatgcctagtgggaatctagaaaacctgttgcatggtaacgaagatcatgagtctagaaatctgaatctcaatttcac |
215 |
Q |
| |
|
| || || |||||||||||||||||| | | ||||| ||| ||||| ||||||| | ||| |||| ||| ||||| | |||||||| |||| |
|
|
| T |
35754892 |
tcaaagctattgtttttgagttcatgtcaaatgggagtcttgaaaagttgttgcacgataatgaagg------gtcaggaaattttaatctcaacctcac |
35754985 |
T |
|
| Q |
216 |
acaaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatacagagcaagttgtagttcattgtgatgttaaaccaagcaat |
315 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||| |||| ||||||||| |
|
|
| T |
35754986 |
acaaaggttagacattgctcttgatgtagctcatgcattggattatcttcacaatgatacagaacaagtcgtagttcactgtgatattaagccaagcaat |
35755085 |
T |
|
| Q |
316 |
gttcttcttgatgatgacggtgtgacccacttaggagactttggcgtagctaggttcctccatggagctacagaatattcaagtaaaaatcaagttattt |
415 |
Q |
| |
|
||||||||||||||||| ||| ||||||| |||||||||||| |||||||| || | ||||||||||||||| ||||||||||| ||||||||| || |
|
|
| T |
35755086 |
gttcttcttgatgatgaaattgtagcccacttgggagactttggcctagctaggctcattcatggagctacagaacattcaagtaaagatcaagttaatt |
35755185 |
T |
|
| Q |
416 |
cctccacaatta |
427 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
35755186 |
cctctacaatta |
35755197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 415
Target Start/End: Original strand, 35410649 - 35411044
Alignment:
| Q |
14 |
agagtttcatggtggaatgcaatgctttaggaaagatgaagcaccgtaatcttgtcaaaatcctaacttgttgttcaagtgttgattataatggtgaaga |
113 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
35410649 |
agagtttcatggcggaatgcaatgctttaagaaagatgaggcaccgtaatcttgtcaaaatcctaacgtgttgttcaagtgttgattataatggtgaaga |
35410748 |
T |
|
| Q |
114 |
ttttaaggccattgtttttgagttcatgcctagtgggaatctagaaaacctgttgcatggtaacgaagatcatgagtctagaaatctgaatctcaatttc |
213 |
Q |
| |
|
|| ||||| |||||||||||||| ||||||| ||||||||||||||| | ||||||| ||||||| | |||| ||||| |||||||| || |
|
|
| T |
35410749 |
gttcaaggctattgtttttgagttaatgcctaatgggaatctagaaaagtttttgcatgataacgaa------gggtctgaaaatcataatctcaacctc |
35410842 |
T |
|
| Q |
214 |
acacaaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatacagagcaagttgtagttcattgtgatgttaaaccaagca |
313 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||| | ||||||||||||||||| |||||||||| ||||||||| |||||| |||| || |||| |
|
|
| T |
35410843 |
acacaaaggttagacattgctcttgatgtagctcatgcacttgattatcttcacaatgagacagagcaagctgtagttcactgtgatcttaagccgagca |
35410942 |
T |
|
| Q |
314 |
atgttcttcttgatgatgacggtgtgacccacttaggagactttggcgtagctaggttcctccatggagctacagaatattcaagtaaaaatcaagttat |
413 |
Q |
| |
|
| ||||||||||| |||||| ||| ||||||| |||||||||||| | |||||| || | | |||| | ||||| ||||||||||| |||||||||| |
|
|
| T |
35410943 |
acgttcttcttgacgatgactttgtagcccacttgggagactttggcttggctaggctcattcttggaaccacagagcattcaagtaaagatcaagttat |
35411042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 4 - 419
Target Start/End: Original strand, 35385978 - 35386387
Alignment:
| Q |
4 |
ggaggagcagagagtttcatggtggaatgcaatgctttaggaaagatgaagcaccgtaatcttgtcaaaatcctaacttgttgttcaagtgttgattata |
103 |
Q |
| |
|
|||| |||| |||||||||||| |||||||||||| | |||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
35385978 |
ggagcagcaaagagtttcatggcagaatgcaatgctctgggaaagatgaagcaccagaatcttgtcaaggtcctaacctgttgttcaagtgttgattata |
35386077 |
T |
|
| Q |
104 |
atggtgaagattttaaggccattgtttttgagttcatgcctagtgggaatctagaaaacctgttgcatggtaacgaagatcatgagtctagaaatctgaa |
203 |
Q |
| |
|
| ||||||||||| ||||| |||||||||||||||||| | | || || ||| ||||| | ||||| ||| |||| |||| ||||| || |
|
|
| T |
35386078 |
agggtgaagatttcaaggctattgtttttgagttcatgtcaaatgagagtcttgaaaagtttttgcacaataatgaagg------gtctgaaaatcataa |
35386171 |
T |
|
| Q |
204 |
tctcaatttcacacaaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatacagagcaagttgtagttcattgtgatgtt |
303 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||| || |||||||||||| | |||||||||||||||||||||||||||| |||||||| |||||| || |
|
|
| T |
35386172 |
tctcaacctcacataaaggttagacattgctcttgatgtagctcatgcacttgattatcttcacaatgatacagagcaagccgtagttcactgtgatctt |
35386271 |
T |
|
| Q |
304 |
aaaccaagcaatgttcttcttgatgatgacggtgtgacccacttaggagactttggcgtagctaggttcctccatggagctacagaatattcaagtaaaa |
403 |
Q |
| |
|
|| |||||||| ||||||||||| |||||| ||| ||||||| |||||||||||| | |||||| || | | |||| | ||||| ||||||||||| |
|
|
| T |
35386272 |
aagccaagcaacgttcttcttgacgatgactttgtagcccacttgggagactttggcttggctaggatcattcttggaaccacagagcattcaagtaaag |
35386371 |
T |
|
| Q |
404 |
atcaagttatttcctc |
419 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
35386372 |
atcaagttatttcctc |
35386387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 4 - 199
Target Start/End: Original strand, 35370210 - 35370408
Alignment:
| Q |
4 |
ggaggagcagagagtttcatggtggaat--gcaatgctttaggaaagatgaagcaccgtaatcttgtcaaaatcctaacttgttgttcaagtgttgatta |
101 |
Q |
| |
|
|||| |||| |||||||||| | ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
35370210 |
ggagcagcaaagagtttcattgcggaatatgcaatgctttaggaaagatgaggcaccgtaatcttgtcaaaatcctaacgtgttgctcaagtgttgatta |
35370309 |
T |
|
| Q |
102 |
taatggtgaaga-ttttaaggccattgtttttgagttcatgcctagtgggaatctagaaaacctgttgcatggtaacgaagatcatgagtctagaaatc |
199 |
Q |
| |
|
|||||||||||| || ||||| |||||||||||||||||||| | ||||| | |||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
35370310 |
taatggtgaagagttccaaggctattgtttttgagttcatgcccaatgggagtttagaaaacatgttgcatggtaacgaagaacatgagtctagaaatc |
35370408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 41 - 427
Target Start/End: Original strand, 35366863 - 35367243
Alignment:
| Q |
41 |
taggaaagatgaagcaccgtaatcttgtcaaaatcctaacttgttgttcaagtgttgattataatggtgaagattttaaggccattgtttttgagttcat |
140 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||| |||||||| || ||||| ||||||||||||||||| |
|
|
| T |
35366863 |
taggaaagatgaagcaccgaaatcttgtcaagatcctaacttgttgttcaagcattgattataagggtgaagagttcaaggctattgtttttgagttcat |
35366962 |
T |
|
| Q |
141 |
gcctagtgggaatctagaaaacctgttgcatggtaacgaagatcatgagtctagaaatctgaatctcaatttcacacaaaggttagacattgctctcgac |
240 |
Q |
| |
|
||||| || | ||||||||| || |||||| ||||||| | |||| |||||| ||||||| ||| ||| || | ||||||||||| || |
|
|
| T |
35366963 |
gcctaagggaagtctagaaaagcttctgcatgataacgaa------gggtctggaaatcataatctcagcctcagacacagagttgacattgctcttgat |
35367056 |
T |
|
| Q |
241 |
gtagctcatgcattggattatcttcacaatgatacagagcaagttgtagttcattgtgatgttaaaccaagcaatgttcttcttgatgatgacggtgtga |
340 |
Q |
| |
|
|||||||||||| | |||||||||||||||| ||||||| || ||||||| |||||| |||| || ||||| |||||||| || |||||| ||| |
|
|
| T |
35367057 |
gtagctcatgcactcgattatcttcacaatggtacagagaaatccatagttcactgtgatattaagccgagcaacgttcttctggacgatgacactgtag |
35367156 |
T |
|
| Q |
341 |
cccacttaggagactttggcgtagctaggttcctccatggagctacagaatattcaagtaaaaatcaagttatttcctccacaatta |
427 |
Q |
| |
|
||||||| |||||||||||| |||||||| || | | |||| | | ||| ||||||||||| ||||||||| ||| |||||||||| |
|
|
| T |
35367157 |
cccacttgggagactttggcttagctaggctcattcttggaaccagagaccattcaagtaaagatcaagttaattcttccacaatta |
35367243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 74 - 333
Target Start/End: Original strand, 35437049 - 35437302
Alignment:
| Q |
74 |
tcctaacttgttgttcaagtgttgattataatggtgaagattttaaggccattgtttttgagttcatgcctagtgggaatctagaaaacctgttgcatgg |
173 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||| ||| ||||| || |||||||| |||||||||| |||| ||||||| | ||||||| |
|
|
| T |
35437049 |
tcctaactttctgttcaagtattgattataatggtgaagttttcaaggctatagtttttgaattcatgcctatggggagtctagaaggcttgttgcacaa |
35437148 |
T |
|
| Q |
174 |
taacgaagatcatgagtctagaaatctgaatctcaatttcacacaaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgat |
273 |
Q |
| |
|
||| ||| ||| ||||||||||||||| |||| ||| |||||||||| |||||||||| ||||| ||||||||||||||||||||| || || |
|
|
| T |
35437149 |
taatgaacatcttgagtctagaaatctaaatc------tcagacaaaggttaagtgttgctctcgatgtagcccatgcattggattatcttcaccataat |
35437242 |
T |
|
| Q |
274 |
acagagcaagttgtagttcattgtgatgttaaaccaagcaatgttcttcttgatgatgac |
333 |
Q |
| |
|
| | ||| ||||||||| |||||| |||| ||||| ||||||||||| || |||||| |
|
|
| T |
35437243 |
tcccatgaagctgtagttcactgtgatattaagccaagtaatgttcttctcgacgatgac |
35437302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 317
Target Start/End: Original strand, 35388441 - 35388544
Alignment:
| Q |
214 |
acacaaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatacagagcaagttgtagttcattgtgatgttaaaccaagca |
313 |
Q |
| |
|
|||||||||||| ||||||||| | ||||||| | |||||||||||||||||| || ||||||| |||||||||||||||| |||| |||| || |
|
|
| T |
35388441 |
acacaaaggttaagtattgctctcaatgtagctcgcacgttggattatcttcacaataattttgagcaagctgtagttcattgtgatattaagccaaaca |
35388540 |
T |
|
| Q |
314 |
atgt |
317 |
Q |
| |
|
|||| |
|
|
| T |
35388541 |
atgt |
35388544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 333
Target Start/End: Complemental strand, 10716947 - 10716904
Alignment:
| Q |
290 |
ttcattgtgatgttaaaccaagcaatgttcttcttgatgatgac |
333 |
Q |
| |
|
||||||||||| |||| ||||||||||| ||||||||||||||| |
|
|
| T |
10716947 |
ttcattgtgatcttaagccaagcaatgtccttcttgatgatgac |
10716904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 238; Significance: 1e-131; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 14 - 427
Target Start/End: Complemental strand, 10410210 - 10409797
Alignment:
| Q |
14 |
agagtttcatggtggaatgcaatgctttaggaaagatgaagcaccgtaatcttgtcaaaatcctaacttgttgttcaagtgttgattataatggtgaaga |
113 |
Q |
| |
|
|||||||| ||||||||||||| ||| | ||||| ||||||||||| |||||||| || |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10410210 |
agagtttcgtggtggaatgcaaagctctgggaaacatgaagcaccggaatcttgttaagatcctaacttgttgttcaagtgttgattataaaggtgaaga |
10410111 |
T |
|
| Q |
114 |
ttttaaggccattgtttttgagttcatgcctagtgggaatctagaaaacctgttgcatggtaacgaagatcatgagtctagaaatctgaatctcaatttc |
213 |
Q |
| |
|
||| ||||| |||||||||||||||||||||| ||||| | | |||||||| ||||||||||| |||| || ||||||||||||||||||||||||||| |
|
|
| T |
10410110 |
tttcaaggctattgtttttgagttcatgcctaatgggagtttggaaaaccttttgcatggtaataaagaacacgagtctagaaatctgaatctcaatttc |
10410011 |
T |
|
| Q |
214 |
acacaaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatacagagcaagttgtagttcattgtgatgttaaaccaagca |
313 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||| |||||||||| || |||||| ||| ||||||||||||| |
|
|
| T |
10410010 |
acacaaaggttagacattgttctcaacgtagctcatgcattggattatcttcacattgatgcagagcaagtggtggttcatagtggcgttaaaccaagca |
10409911 |
T |
|
| Q |
314 |
atgttcttcttgatgatgacggtgtgacccacttaggagactttggcgtagctaggttcctccatggagctacagaatattcaagtaaaaatcaagttat |
413 |
Q |
| |
|
|||||||||| ||||||||| ||| | |||||||||||||||||| |||||||| | | | ||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
10409910 |
atgttcttctcgatgatgacaatgtagctcacttaggagactttggcttagctaggctaattcgtggagctacagaacattcaagtaaagatcaagttat |
10409811 |
T |
|
| Q |
414 |
ttcctccacaatta |
427 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
10409810 |
ttcctctacaatta |
10409797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 4 - 419
Target Start/End: Complemental strand, 10415911 - 10415502
Alignment:
| Q |
4 |
ggaggagcagagagtttcatggtggaatgcaatgctttaggaaagatgaagcaccgtaatcttgtcaaaatcctaacttgttgttcaagtgttgattata |
103 |
Q |
| |
|
|||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10415911 |
ggagcagcaaagagtttcatggaggaatgcaatgctttaggaaagatgaagcaccgtaatcttgtcaaaatcctaacttgttgttcaagtgttgattata |
10415812 |
T |
|
| Q |
104 |
atggtgaagattttaaggccattgtttttgagttcatgcctagtgggaatctagaaaacctgttgcatggtaacgaagatcatgagtctagaaatctgaa |
203 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||| |||| ||| ||||| | |||| | ||||||| | |||| ||| || || |
|
|
| T |
10415811 |
atggtgaagatttcaaggctattgtttttgagttcatgcctaaggggagtctggaaaagattctgcacgataacgaa------gggtctggaattcataa |
10415718 |
T |
|
| Q |
204 |
tctcaatttcacacaaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatacagagcaagttgtagttcattgtgatgtt |
303 |
Q |
| |
|
||||| | |||||||||||||||| ||||| || ||||||||||| | |||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
10415717 |
tctcagcctggcacaaaggttagacatcgctcttgatctagctcatgcacttgattatcttcacaatgatacagagcaagccgtagttcactgtgatgtt |
10415618 |
T |
|
| Q |
304 |
aaaccaagcaatgttcttcttgatgatgacggtgtgacccacttaggagactttggcgtagctaggttcctccatggagctacagaatattcaagtaaaa |
403 |
Q |
| |
|
|| ||||||| ||||||||||| ||||||| ||| ||||||| |||||||||||| |||||||| || | | |||||| ||||| ||||||||||| |
|
|
| T |
10415617 |
aagtcaagcaacgttcttcttgacgatgacgttgtagcccacttgggagactttggcttagctaggctcattcttggagccacagagcattcaagtaaag |
10415518 |
T |
|
| Q |
404 |
atcaagttatttcctc |
419 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
10415517 |
atcaagtcatttcctc |
10415502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 4 - 425
Target Start/End: Complemental strand, 10420798 - 10420383
Alignment:
| Q |
4 |
ggaggagcagagagtttcatggtggaatgcaatgctttaggaaagatgaagcaccgtaatcttgtcaaaatcctaacttgttgttcaagtgttgattata |
103 |
Q |
| |
|
||||||||| ||||||||| | ||| || | ||| ||||||||||||| ||||| || |||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
10420798 |
ggaggagcaaagagtttcaaagcagaacgcgaagctctaggaaagatgaaacaccgaaaccttgtcaagatcctaacttgttgttcaagcgttgattata |
10420699 |
T |
|
| Q |
104 |
atggtgaagattttaaggccattgtttttgagttcatgcctagtgggaatctagaaaacctgttgcatggtaacgaagatcatgagtctagaaatctgaa |
203 |
Q |
| |
|
| |||||||| || ||||| |||||||||||||||||||||| |||| ||||||||| || |||| | ||| ||| | |||| ||| || || |
|
|
| T |
10420698 |
agggtgaagagttcaaggctattgtttttgagttcatgcctaaggggagtctagaaaagcttctgcacgataaagaa------gggtctggaattcataa |
10420605 |
T |
|
| Q |
204 |
tctcaatttcacacaaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatacagagcaagttgtagttcattgtgatgtt |
303 |
Q |
| |
|
||||| ||| ||||||| | ||||||||||| || |||||||||||| | ||||||||||||||| ||||||||||| ||||||| |||||| || |
|
|
| T |
10420604 |
tctcagcctcagacaaagggttgacattgctcttgatgtagctcatgcacttaattatcttcacaatggtacagagcaagccatagttcactgtgatatt |
10420505 |
T |
|
| Q |
304 |
aaaccaagcaatgttcttcttgatgatgacggtgtgacccacttaggagactttggcgtagctaggttcctccatggagctacagaatattcaagtaaaa |
403 |
Q |
| |
|
|| || ||||| |||||||| || |||||| ||| | ||||| |||||||||||| |||||||| || | | |||| | | ||| ||||||||||| |
|
|
| T |
10420504 |
aagccgagcaacgttcttctggacgatgacattgtagctcacttgggagactttggcttagctaggctcattcttggaaccagagaccattcaagtaaag |
10420405 |
T |
|
| Q |
404 |
atcaagttatttcctccacaat |
425 |
Q |
| |
|
||||||||| ||| |||||||| |
|
|
| T |
10420404 |
atcaagttaattcttccacaat |
10420383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 333
Target Start/End: Complemental strand, 39875900 - 39875856
Alignment:
| Q |
289 |
gttcattgtgatgttaaaccaagcaatgttcttcttgatgatgac |
333 |
Q |
| |
|
|||||||||||| | |||||||||||||| |||||||| |||||| |
|
|
| T |
39875900 |
gttcattgtgatttaaaaccaagcaatgtccttcttgacgatgac |
39875856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 333
Target Start/End: Complemental strand, 39884023 - 39883979
Alignment:
| Q |
289 |
gttcattgtgatgttaaaccaagcaatgttcttcttgatgatgac |
333 |
Q |
| |
|
|||||||||||| | |||||||||||||| |||||||| |||||| |
|
|
| T |
39884023 |
gttcattgtgatttaaaaccaagcaatgtccttcttgacgatgac |
39883979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 333
Target Start/End: Complemental strand, 39890977 - 39890933
Alignment:
| Q |
289 |
gttcattgtgatgttaaaccaagcaatgttcttcttgatgatgac |
333 |
Q |
| |
|
|||||||||||| | |||||||||||||| |||||||| |||||| |
|
|
| T |
39890977 |
gttcattgtgatttaaaaccaagcaatgtccttcttgaagatgac |
39890933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 154; Significance: 2e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 4 - 369
Target Start/End: Complemental strand, 29623352 - 29622993
Alignment:
| Q |
4 |
ggaggagcagagagtttcatggtggaatgcaatgctttaggaaagatgaagcaccgtaatcttgtcaaaatcctaacttgttgttcaagtgttgattata |
103 |
Q |
| |
|
|||| |||| |||||||||| | ||||| || || ||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
29623352 |
ggagcagcaaagagtttcattgcagaatgtaaatctctaggaaagatgaaacaccggaatcttgtcaagatcctaacttgttgttcaagtgttgattata |
29623253 |
T |
|
| Q |
104 |
atggtgaagattttaaggccattgtttttgagttcatgcctagtgggaatctagaaaacctgttgcatggtaacgaagatcatgagtctagaaatctgaa |
203 |
Q |
| |
|
| ||||||||||| ||||| |||||||||||||||||||||| | || ||||||||| ||||||| | ||| |||| || ||| ||| | || |
|
|
| T |
29623252 |
aaggtgaagatttcaaggctattgtttttgagttcatgcctaatatgagtctagaaaagatgttgcacgataatgaag-----ga-tctggaagccataa |
29623159 |
T |
|
| Q |
204 |
tctcaatttcacacaaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatacagagcaagttgtagttcattgtgatgtt |
303 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||| ||| |||| ||||||||| ||||||||| |
|
|
| T |
29623158 |
tctcaacctcacacaaaggatagacattgctcttgatgtagctcatgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatgtt |
29623059 |
T |
|
| Q |
304 |
aaaccaagcaatgttcttcttgatgatgacggtgtgacccacttaggagactttggcgtagctagg |
369 |
Q |
| |
|
|| ||||||||||||||||||||||||||| ||| ||||||| ||||||||||| |||||||| |
|
|
| T |
29623058 |
aagccaagcaatgttcttcttgatgatgacattgtagcccacttgggagactttggattagctagg |
29622993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 28 - 427
Target Start/End: Original strand, 30663012 - 30663405
Alignment:
| Q |
28 |
gaatgcaatgctttaggaaagatgaagcaccgtaatcttgtcaaaatcctaacttgttgttcaagtgttgattataatggtgaagattttaaggccattg |
127 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||| ||||||||||| || || || ||||||||||| || |||||||| ||||| || || ||||| |||| |
|
|
| T |
30663012 |
gaatgcaaagctttgggaaagatgaagcaccgaaatcttgtcaagattcttacatgttgttcaagcgtagattataagggtgacgagttcaaggctattg |
30663111 |
T |
|
| Q |
128 |
tttttgagttcatgcctagtgggaatctagaaaacctgttgcatggtaacgaagatcatgagtctagaaatctgaatctcaatttcacacaaaggttaga |
227 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||| || |||| | ||||||||| |||| ||| || ||||||| ||||||||||| | || |
|
|
| T |
30663112 |
tttttgagttcatgcctaaggggagtctagaaaagcttctgcacgataacgaaga------gtctggaattcataatctcagcctcacacaaagggttga |
30663205 |
T |
|
| Q |
228 |
cattgctctcgacgtagctcatgcattggattatcttcacaatgatacagagcaagttgtagttcattgtgatgttaaaccaagcaatgttcttcttgat |
327 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||| ||| ||| | ||||||||||| |||||||| ||||||| |||||||||||||||| |
|
|
| T |
30663206 |
cattgctcttgatgtagctcatgcattggattatcttcacaatggtactgagaatgttgtagttcactgtgatgtgaaaccaaacaatgttcttcttgat |
30663305 |
T |
|
| Q |
328 |
gatgacggtgtgacccacttaggagactttggcgtagctaggttcctccatggagctacagaatattcaagtaaaaatcaagttatttcctccacaatta |
427 |
Q |
| |
|
|||||| || ||||||| ||||||||||| | || ||||| | |||||||| |||| |||||||||| | ||||||||| ||| |||||||||| |
|
|
| T |
30663306 |
gatgacatggtagcccacttgggagactttggattggcaaggttaattcatggagccacagcatattcaagtgtagatcaagttaattcgtccacaatta |
30663405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 28 - 427
Target Start/End: Original strand, 30671692 - 30672085
Alignment:
| Q |
28 |
gaatgcaatgctttaggaaagatgaagcaccgtaatcttgtcaaaatcctaacttgttgttcaagtgttgattataatggtgaagattttaaggccattg |
127 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||| ||||||||||| || || || ||||||||||| || |||||||| ||||| || || ||||| |||| |
|
|
| T |
30671692 |
gaatgcaaagctttgggaaagatgaagcaccgaaatcttgtcaagattcttacatgttgttcaagcgtagattataagggtgacgagttcaaggctattg |
30671791 |
T |
|
| Q |
128 |
tttttgagttcatgcctagtgggaatctagaaaacctgttgcatggtaacgaagatcatgagtctagaaatctgaatctcaatttcacacaaaggttaga |
227 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||| || |||| | ||||||||| |||| ||| || ||||||| ||||||||||| | || |
|
|
| T |
30671792 |
tttttgagttcatgcctaaggggagtctagaaaagcttctgcacgataacgaaga------gtctggaattcataatctcagcctcacacaaagggttga |
30671885 |
T |
|
| Q |
228 |
cattgctctcgacgtagctcatgcattggattatcttcacaatgatacagagcaagttgtagttcattgtgatgttaaaccaagcaatgttcttcttgat |
327 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||| ||| ||| | ||||||||||| |||||||| ||||||| |||||||||||||||| |
|
|
| T |
30671886 |
cattgctcttgatgtagctcatgcattggattatcttcacaatggtactgagaatgttgtagttcactgtgatgtgaaaccaaacaatgttcttcttgat |
30671985 |
T |
|
| Q |
328 |
gatgacggtgtgacccacttaggagactttggcgtagctaggttcctccatggagctacagaatattcaagtaaaaatcaagttatttcctccacaatta |
427 |
Q |
| |
|
|||||| || ||||||| ||||||||||| | || ||||| | |||||||| |||| |||||||||| | ||||||||| ||| |||||||||| |
|
|
| T |
30671986 |
gatgacatggtagcccacttgggagactttggattggcaaggttaattcatggagccacagcatattcaagtgtagatcaagttaattcgtccacaatta |
30672085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 28 - 427
Target Start/End: Original strand, 30626061 - 30626454
Alignment:
| Q |
28 |
gaatgcaatgctttaggaaagatgaagcaccgtaatcttgtcaaaatcctaacttgttgttcaagtgttgattataatggtgaagattttaaggccattg |
127 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||| ||||||||||| || || || ||||||||||| | |||||||| ||||| || || ||||| |||| |
|
|
| T |
30626061 |
gaatgcaaagctttgggaaagatgaagcaccgaaatcttgtcaagattcttacatgttgttcaagaatagattataagggtgacgagttcaaggctattg |
30626160 |
T |
|
| Q |
128 |
tttttgagttcatgcctagtgggaatctagaaaacctgttgcatggtaacgaagatcatgagtctagaaatctgaatctcaatttcacacaaaggttaga |
227 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||| || |||| | ||||||||| |||| ||| || ||||||| ||||||||||| | || |
|
|
| T |
30626161 |
tttttgagttcatgcctaaggggagtctagaaaagcttctgcacgataacgaaga------gtctggaattcataatctcagcctcacacaaagggttga |
30626254 |
T |
|
| Q |
228 |
cattgctctcgacgtagctcatgcattggattatcttcacaatgatacagagcaagttgtagttcattgtgatgttaaaccaagcaatgttcttcttgat |
327 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||| ||| ||| | ||||||||||| |||||||| ||||||| |||||||||||||||| |
|
|
| T |
30626255 |
cattgctcttgatgtagctcatgcattggattatcttcacaatggtactgagaatgttgtagttcaatgtgatgtgaaaccaaacaatgttcttcttgat |
30626354 |
T |
|
| Q |
328 |
gatgacggtgtgacccacttaggagactttggcgtagctaggttcctccatggagctacagaatattcaagtaaaaatcaagttatttcctccacaatta |
427 |
Q |
| |
|
|||||| || ||||||| ||||||||||| | || ||||| | |||||||| |||| |||||||||| | ||||||||| ||| |||||||||| |
|
|
| T |
30626355 |
gatgacatggtagcccacttgggagactttggattggcaaggttaattcatggagccacagcatattcaagtgtagatcaagttaattcgtccacaatta |
30626454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 333
Target Start/End: Complemental strand, 17923410 - 17923367
Alignment:
| Q |
290 |
ttcattgtgatgttaaaccaagcaatgttcttcttgatgatgac |
333 |
Q |
| |
|
||||||||||| | |||||||||||||| ||||||||||||||| |
|
|
| T |
17923410 |
ttcattgtgatctaaaaccaagcaatgtccttcttgatgatgac |
17923367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 79 - 354
Target Start/End: Original strand, 1153787 - 1154056
Alignment:
| Q |
79 |
acttgttgttcaagtgttgattataatggtgaagattttaaggccattgtttttgagttcatgcctagtgggaatctagaaaacctgttgcatggtaacg |
178 |
Q |
| |
|
|||||||| |||||| |||||| || ||||||||||| ||||| |||||||||||||||||||||| |||| ||||||||| ||||||||| || | |
|
|
| T |
1153787 |
acttgttgctcaagtattgattgcaaaggtgaagatttcaaggctattgtttttgagttcatgcctaacgggagtctagaaaagatgttgcatgatattg |
1153886 |
T |
|
| Q |
179 |
aagatcatgagtctagaaatctgaatctcaatttcacacaaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatacaga |
278 |
Q |
| |
|
||| |||| ||||| |||||||| ||||| ||||| |||| ||||||| || ||||||||||| | |||| |||||||||||||||| | |
|
|
| T |
1153887 |
aagg------gtctgaaaatcacaatctcaagctcacaaaaagggtagattttgctcttgatatagctcatgcacttgattttcttcacaatgatacaaa |
1153980 |
T |
|
| Q |
279 |
gcaagttgtagttcattgtgatgttaaaccaagcaatgttcttcttgatgatgacggtgtgacccacttaggagac |
354 |
Q |
| |
|
||||||| |||||| |||||| |||| ||||||||||||||||||||||||||| ||| ||||||| |||||| |
|
|
| T |
1153981 |
gcaagttacagttcactgtgatattaagccaagcaatgttcttcttgatgatgacaatgtagcccacttgggagac |
1154056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 28 - 170
Target Start/End: Original strand, 13564620 - 13564762
Alignment:
| Q |
28 |
gaatgcaatgctttaggaaagatgaagcaccgtaatcttgtcaaaatcctaacttgttgttcaagtgttgattataatggtgaagattttaaggccattg |
127 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||| ||| || || || ||| ||||||||| ||||| |||| ||||| ||||| ||||| |||| |
|
|
| T |
13564620 |
gaatgcaaagctttaggaaagatgaagcaccgaaatcgtgttaagattcttccttaatgttcaagtattgataataagggtgacgatttcaaggctattg |
13564719 |
T |
|
| Q |
128 |
tttttgagttcatgcctagtgggaatctagaaaacctgttgca |
170 |
Q |
| |
|
|||||||||||||| ||| ||| | ||||||||| ||||||| |
|
|
| T |
13564720 |
tttttgagttcatgtctaatggtagtctagaaaagatgttgca |
13564762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 242 - 321
Target Start/End: Original strand, 13564816 - 13564895
Alignment:
| Q |
242 |
tagctcatgcattggattatcttcacaatgatacagagcaagttgtagttcattgtgatgttaaaccaagcaatgttctt |
321 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| || ||||| |||||| |
|
|
| T |
13564816 |
tagcttatgcattggattatcttcacaatgatgtagagcaagccttaggtcattgtgatgttaagccgagcaacgttctt |
13564895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 333
Target Start/End: Original strand, 12932481 - 12932524
Alignment:
| Q |
290 |
ttcattgtgatgttaaaccaagcaatgttcttcttgatgatgac |
333 |
Q |
| |
|
||||||||||| | |||||||||||||| ||||||||||||||| |
|
|
| T |
12932481 |
ttcattgtgatctaaaaccaagcaatgtccttcttgatgatgac |
12932524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 333
Target Start/End: Original strand, 12948846 - 12948889
Alignment:
| Q |
290 |
ttcattgtgatgttaaaccaagcaatgttcttcttgatgatgac |
333 |
Q |
| |
|
||||||||||| | |||||||||||||| ||||||||||||||| |
|
|
| T |
12948846 |
ttcattgtgatctaaaaccaagcaatgtccttcttgatgatgac |
12948889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 333
Target Start/End: Original strand, 12907394 - 12907435
Alignment:
| Q |
292 |
cattgtgatgttaaaccaagcaatgttcttcttgatgatgac |
333 |
Q |
| |
|
||||||||| | |||||||||||||| ||||||||||||||| |
|
|
| T |
12907394 |
cattgtgatctaaaaccaagcaatgtccttcttgatgatgac |
12907435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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