View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18642_low_9 (Length: 425)
Name: NF18642_low_9
Description: NF18642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18642_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 173 - 410
Target Start/End: Original strand, 9199083 - 9199315
Alignment:
| Q |
173 |
gtccatcacgaagaagcataaactctaaatattctctgcgaaatggttaatcagattaacttaatctaatctaatctaatataataaaatcctcgtggtt |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9199083 |
gtccatcacgaagaagcataaactctaaatattctctgcgaaatggttaatcagattaacttaatctaatctaat-----ataataaaatcctcgtggtt |
9199177 |
T |
|
| Q |
273 |
attttctatgnnnnnnnaattcttcccagcttacagtagtgactgtgttatcaaaaggaccccaaccccaaccccaatttagtgggatgaaccttcggtg |
372 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9199178 |
attttctatgtttttttaattcttcccagcttacagtagtgactgtgttatcaaaaggaccccaaccccaaccccaatttagtgggatgaaccttcggtg |
9199277 |
T |
|
| Q |
373 |
gtttggtagggtcacgttatacatctgacaggataagg |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9199278 |
gtttggtagggtcacgttatacatctgacaggataagg |
9199315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 9198911 - 9199003
Alignment:
| Q |
1 |
tttttagcacatcaaagatggccgtactctcaatatttgggttgtagcttacacatctagttgcttcattggcactttaaagtccggttatgg |
93 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
9198911 |
tttttagcacatcaaacatggccgaactctcaatatttgggttgtagcttacacatctaattgcttcattggcactttaaagttcggttatgg |
9199003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University